Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1781 ATGTGTTCACTCTTGCTAGCGGAGCTCTTCAGTCTCCCAGCTTCATTTCCCTCCCACGAACACGAAGGATGCGTGCGTCTTTTTGGTATCCCTTCTCCGTACTGTCATTACTCAAAAGCACAGAGAGGTCGTTTCCTCTCTGAAACTGGCGGTTTAATCTCCAAGACCTTGAAACTAATGGGGACATCAGGCGCAAAGGACGATATAGAGATGAATAGTGAGGGGGAAGACTTATCACCTGGAACGGATATGGATACAGATGATGACGATTATTATGCTGAGCCAGTCAACATACATGATCTGGGGGAAGCATTTCTAAATGATTTTTGTAAGAAGTCATCAATGGCATTTTTTAATCAGTACGGCCTTATCAGTCACCAAATCAACTCGTACAATGAGTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTATTTTGGTGAGATTGTAGTTCAGCCAGGATATGACCCCTCTAAGAAAGGAGACGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACCCTCGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATGGAAATTAGTTTAGAGGTATATACTCAAAGGTTAGTCAGAAGCGACAAATTTAAAACTGGAAAAGATCAATATGTCGACAAGGAACATGTAACGGGAGGAGAGATCAGGGATATCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTCTGCTGGATGAAGGATGAGCAGAAACGTGACTGTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTGTTGCTCAAGAGCAGAGTTGTTTGAGAAGACTCTGGATTTCTAATATTCAAGGCTGGACTGTGGCATACAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGAACTAAAAAGCAAGGAGAAAGTCCTCAATGTATATTTTTTGTCCACAGAAGTTCCTGTGTGGATTTTATTCTTTGCACTTGGTGTTTCATCAGACAAAGAAATAGTAGATTTAATCGACTATGGCAGAGATGATCCGACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGATTTTCGAAGAGGTAAAAGAGCACTGAATTTTTTGGACAATGAGGTTAAAAAGACAAGTTTTCCACCTGCTGAAAAAATTGAAGATTGCCTGAACCTATATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGATATATGGTTAAATGTCTTCTGCAAGCCTATACTGGCCGGAGGAAATGTGATAATAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGGAGAACTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGCATGGAAAAAGCTTTACAAAGGGACCTCTATGGGGATCGTGTAGTGCGCCAAATAGAACACTATTTTGATGCTTCAATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTTAAGAGGATGGAAAGGATTTCAGGTGTGGTTGCAACTCTTGGCCGTGCTAATCCCTTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTCGGTGATCAAAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTCCTCTCCACTCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCGTCACAGGACTTGTAAGCTTAAACACATCAAAGCCCATAGTTCCCACATTGTTTCGATGTGGAATGGAGAATTTGGTGGATGATACGTTTACTTCTCTTAGTGGGAAGCACAAAATTTTTCTTGATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTAACAAAAGTGAGACGCAAGCGACGAAGGGATCCGTTGCTGCATCAGGTAGAAGTCAAAAGAGATGAACAGCTGAAAGAGGTACGTATATTTTCCGACGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAATAGGATTGATAAGTCTAAGGGAGAAAACTACACTTTTCAATCCCTTTTGAACAAGGGAATAATTGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATCTTGCGGAAGATGAAGGGACTACGAAATATTCCCATTGTGAACTTGATATGTCATTTTTATTAGGTTTAAGCTGCTCACTTGTCCCGTTTGCAAATCATGACCATGCTAGGAGGGCTCTGTTTCAATCCCAGAAGCACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTGGATACTTTATCCCACCAGTTACACTATCCACAAAGACCACTTTTTCGTACAATGACTGCTGATTGCCTTGGAACGCCTGGATACCTGTCATCTCACACCGGTATACTACCAAAACCTGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCATCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACAGGGCTTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATATCCGGAGTTACAAGGCTGAGGTAGATAATAAAGAATCTTCAGAGAAGAGGCGAAAATCTGATGATGTAATAAATTTTGGAAAAACTCAAAGTAAAATTGGAAGAGTTGACAGCTTAGACGAGGATGGCTTCCCTTACATCGGTGCAAATTTGCAGAGTGGGGACATTGTCATTGGTAGATGTGCGGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACTGAGAAGGGCATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAATTATGCTGTTGTATCCCTCAGACAGGTTCGATCTCCTTGTCTTGGAGACAAGTTTTCAAGTATGCATGGACAAAAGGGAGTTCTGGGGTTTTTGGAGTCTCAAGAGAATTTTCCCTTCACCATCCAGGGGATAGTTCCAGATATTGTTATAAATCCACATGCTTTTCCTTCGCGACAGACTCCTGGTCAACTATTGGAAGCGGCTCTCGGGAAAGGGATTGCTGCTGGCGGTTCTCTGAAATATGCGACGCCTTTCTCAACCCCTTCTGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGAAGCGAGAGGGTTTACAATGGCCGAACTGGCGAAATGATGCGATCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGCAACACTGGCCCTGTCCACCCTCTCACACGACAACCTGTTGCCGACCGAAAGCGTTTTGGCGGGATCAAGTTTGGAGAGATGGAACGTGATTGTCTTATAGCTCATGGTGCCTCGGCCAACTTGCACGAACGCCTATTTACCCTCAGTGATTCTTCCCAGATGCACGTTTGCCAGAAATGCAAGAACGTTGCGAGTGTGATTCAGCGATCGGTGGCTGGTGGTCGTAAGATAAGGGGTCCATATTGTCGGGTTTGCGAGTCGGTCGATGATATCGTGAGGGTAAATGTGCCGTATGGAGCCAAGTTGTTGTGCCAGGAGCTATTCAGCATGGGCATCAATCTCAAGTTCGAAACACAGCTGTGTTGA 3765 42.9 MCSLLLAELFSLPASFPSHEHEGCVRLFGIPSPYCHYSKAQRGRFLSETGGLISKTLKLMGTSGAKDDIEMNSEGEDLSPGTDMDTDDDDYYAEPVNIHDLGEAFLNDFCKKSSMAFFNQYGLISHQINSYNEFIKSGLQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMEISLEVYTQRLVRSDKFKTGKDQYVDKEHVTGGEIRDIFIGRLPVMVNSDLCWMKDEQKRDCEFDHGGYFLIKGAEKIFVAQEQSCLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALNFLDNEVKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRVVRQIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDQRYPHPSHWGRVCFLSTPDGENCGLIKNLSVTGLVSLNTSKPIVPTLFRCGMENLVDDTFTSLSGKHKIFLDGEWVGVCEDSLSFVTKVRRKRRRDPLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLNKGIIELIGTEEEEDCRTAWSIKHLAEDEGTTKYSHCELDMSFLLGLSCSLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDVINFGKTQSKIGRVDSLDEDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26921239 26930974 - ClG42_05g0178100.10 Clacu05g1781 249528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1781 1254 Pfam RNA polymerase Rpb2, domain 3 555 614 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 Pfam RNA polymerase Rpb2, domain 5 727 770 IPR007647 GO:0006351(InterPro)
Clacu05g1781 1254 Gene3D - 781 1137 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 FunFam DNA-directed RNA polymerase subunit beta 882 1000 - -
Clacu05g1781 1254 FunFam DNA-directed RNA polymerase subunit beta 1138 1252 - -
Clacu05g1781 1254 Pfam RNA polymerase beta subunit 122 510 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 FunFam DNA-directed RNA polymerase subunit beta 466 654 - -
Clacu05g1781 1254 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 115 1250 IPR015712 GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Clacu05g1781 1254 Pfam RNA polymerase Rpb2, domain 6 780 1151 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 MobiDBLite consensus disorder prediction 66 85 - -
Clacu05g1781 1254 Pfam RNA polymerase Rpb2, domain 7 1153 1251 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 CDD RNA_pol_B_RPB2 123 1250 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Clacu05g1781 1254 ProSitePatterns RNA polymerases beta chain signature. 1004 1016 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 110 1251 - -
Clacu05g1781 1254 Gene3D RNA polymerase alpha subunit dimerisation domain 1138 1252 - -
Clacu05g1781 1254 Gene3D - 811 1000 IPR014724 GO:0003899(InterPro)
Clacu05g1781 1254 Pfam RNA polymerase Rpb2, domain 4 651 712 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 Pfam RNA polymerase Rpb2, domain 2 342 476 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 Gene3D - 115 298 - -
Clacu05g1781 1254 Gene3D - 467 644 - -
Clacu05g1781 1254 Gene3D RNA polymerase Rpb2, domain 2 304 466 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu05g1781 1254 FunFam DNA-directed RNA polymerase subunit beta 115 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1781 K16252 - - csv:101212812 2265.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2380 Clacu-Chr1:34485570 Clacu05g1781 Clacu-Chr5:26921239 5.00E-188 dispersed
Clacu05g1781 Clacu-Chr5:26921239 Clacu08g1235 Clacu-Chr8:22301956 6.60E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32