Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1787 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGATTGCTAGGGAAGGGAACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTAGCGATTAAGGTTTTAAATAAGGACCATGTCAAGAAGGAAGGGATGATGGAGCAGATCCAGCGCGAGATTTCTGTTATGCGTCTTGTTCGTCATCCGAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTCGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTTCAGCAGTTAATCAGCGCAGTTGATTACTGTCACAGCCGTGGAGTCTCTCATCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCTTACGTCGCACCCGAAGTACTAAGAAGAAAGGGCTACGATGGAGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAAGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTGATTTCGAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAGCGAAAGCAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTTAATGCCTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTTTCCAGTTTATTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGCGATGCTCAGTATCGACGATAATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTAAAAGATTTCAAGGTCCGGCTGCAAGGTCCGGCGGAGGGGCGAAAAGGAATGCTGTCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCGATAGTGGAATTCTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTCCGGCCGGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAATGTGTCCCTAACGTTGACGGACGTCACGGCCAATTTGACGGCGACGGATTTTTATGA 1332 46.85 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDHVKKEGMMEQIQREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKAEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKVRLQGPAEGRKGMLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGECVPNVDGRHGQFDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27004319 27005650 - ClG42_05g0178700.10 Clacu05g1787 249534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1787 443 Pfam NAF domain 298 354 IPR004041 GO:0007165(InterPro)
Clacu05g1787 443 CDD CIPK_C 302 416 - -
Clacu05g1787 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Clacu05g1787 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu05g1787 443 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1787 443 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Clacu05g1787 443 SUPERFAMILY Protein kinase-like (PK-like) 7 285 IPR011009 -
Clacu05g1787 443 FunFam Non-specific serine/threonine protein kinase 4 298 - -
Clacu05g1787 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Clacu05g1787 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Clacu05g1787 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Clacu05g1787 443 Coils Coil 39 59 - -
Clacu05g1787 443 CDD STKc_SnRK3 10 264 - -
Clacu05g1787 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1787 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165(InterPro)
Clacu05g1787 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1787 443 FunFam Non-specific serine/threonine protein kinase 296 420 - -
Clacu05g1787 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1787 Clacu-Chr5:27004319 Clacu08g1342 Clacu-Chr8:23428592 8.80E-106 dispersed
Clacu02g2166 Clacu-Chr2:34801422 Clacu05g1787 Clacu-Chr5:27004319 2.00E-35 transposed
Clacu10g1289 Clacu-Chr10:25826814 Clacu05g1787 Clacu-Chr5:27004319 2.00E-174 transposed
Clacu05g1787 Clacu-Chr5:27004319 Clacu06g1315 Clacu-Chr6:24121893 9.40E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73581 PF00069 Pkinase 1.30E-74 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1787 - - - 0.0