Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g1796 | ATGACGGTTGAACCTAGACTCGATGACCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGGGAGAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTTATTATGCTTTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAAACTGGCGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAACGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTCAACCAGTTAGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATTCTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTCAGTAATTTGAACAATTCAAGCAATGATCAGACTACATTTCAGCCAATCATGCTTTCTGGAAACCGTAGTGGGAATATTTTCCGGGGAATGCCTGAGCCATCGGAAATCGATCAACTACAACATGTTAAACATGGGACTCATGCGGACAGTCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCAAACATGTCTTCCGGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCCATCTTCCATTTCGGTAGTATCTTCAAATTCAGATAGCTCACGTCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCGAATGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCGAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATCTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCAAGAATAGATTCTCAACGTCAAGCAGCCACAACAAGCAACAGGTTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAACGCTTGGAAAATCAGAACATAATCTTCTCCAGCAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGATCATGCAATGGTTGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCTAGACTATCATCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCGATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATCGGAACATGCATGTGA | 2070 | 42.03 | MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSETGEEAADPNGKFNKKRKDQNYNEDDDQDYGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNSPACMGMHGLSSPGTVQLSNLNNSSNDQTTFQPIMLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHADSLSSAFDERTVFPASIGLPNANMSSGTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTPSSISVVSSNSDSSRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGAAETLPKRLENQNIIFSSSKDFNVTSQANVLDHAMVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRLSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM | 689 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27168716 | 27173102 | - | ClG42_05g0179600.10 | Clacu05g1796 | 249543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g1796 | 689 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160(InterPro) | |
Clacu05g1796 | 689 | FunFam | Two-component response regulator | 18 | 176 | - | - | |
Clacu05g1796 | 689 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 197 | 250 | IPR006447 | GO:0003677(InterPro) | |
Clacu05g1796 | 689 | PIRSF | RR_ARR_type-B | 1 | 689 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Clacu05g1796 | 689 | MobiDBLite | consensus disorder prediction | 141 | 180 | - | - | |
Clacu05g1796 | 689 | Pfam | Myb-like DNA-binding domain | 199 | 249 | IPR001005 | - | |
Clacu05g1796 | 689 | FunFam | Two-component response regulator | 193 | 256 | - | - | |
Clacu05g1796 | 689 | Gene3D | - | 193 | 256 | - | - | |
Clacu05g1796 | 689 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 194 | 253 | IPR017930 | - | |
Clacu05g1796 | 689 | Pfam | Response regulator receiver domain | 20 | 128 | IPR001789 | GO:0000160(InterPro) | |
Clacu05g1796 | 689 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
Clacu05g1796 | 689 | MobiDBLite | consensus disorder prediction | 141 | 196 | - | - | |
Clacu05g1796 | 689 | MobiDBLite | consensus disorder prediction | 437 | 457 | - | - | |
Clacu05g1796 | 689 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160(InterPro) | |
Clacu05g1796 | 689 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 16 | 371 | IPR045279 | GO:0009736(InterPro) | |
Clacu05g1796 | 689 | Gene3D | - | 17 | 152 | - | - | |
Clacu05g1796 | 689 | SUPERFAMILY | Homeodomain-like | 194 | 254 | IPR009057 | - | |
Clacu05g1796 | 689 | SUPERFAMILY | CheY-like | 16 | 142 | IPR011006 | - | |
Clacu05g1796 | 689 | MobiDBLite | consensus disorder prediction | 432 | 457 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0131 | Clacu-Chr3:1429603 | Clacu05g1796 | Clacu-Chr5:27168716 | 2.70E-22 | dispersed | |
Clacu05g0738 | Clacu-Chr5:6207635 | Clacu05g1796 | Clacu-Chr5:27168716 | 6.00E-90 | dispersed | |
Clacu05g1796 | Clacu-Chr5:27168716 | Clacu06g0463 | Clacu-Chr6:5422022 | 1.50E-88 | dispersed | |
Clacu11g0484 | Clacu-Chr11:4586300 | Clacu05g1796 | Clacu-Chr5:27168716 | 8.40E-111 | wgd | |
Clacu05g1796 | Clacu-Chr5:27168716 | Clacu06g1305 | Clacu-Chr6:23960247 | 8.00E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47716 | PF00072 | Response_reg | 8.90E-23 | CL0304 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g1796 | K14491 | - | csv:101215220 | 1269.99 |