Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1801 ATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGAACATTTGAAACCGCGGAAGATGCTGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAATCCAAATGCAATACAATCCTCGAATTCGAGGATTTTATCGGCTAACTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCAGGGGAGTTTAAAAGAGACATTCCGGCGGTATTTCCGGCATCAACGCCGCTACCTCATGCGGTTGTTGGCTCCGGTGTGGCCAGTTCGGCGGTGGAGGAGATTGGACCGGCGGCGGAGCAAGGGCCATGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAGTTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAACTTCTTTATTATGGATCCATGGAGTTTTGTCTGTGA 564 46.28 MARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNSRILSANLTAKLHRCYMASLQISNQASGEFKRDIPAVFPASTPLPHAVVGSGVASSAVEEIGPAAEQGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27228248 27228891 - ClG42_05g0180100.10 Clacu05g1801 249548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1801 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1801 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1801 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 111 IPR050913 -
Clacu05g1801 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Clacu05g1801 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1801 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1801 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1801 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Clacu05g1801 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1801 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1801 Clacu-Chr5:27228248 Clacu08g1518 Clacu-Chr8:25064303 2.40E-52 dispersed
Clacu05g1801 Clacu-Chr5:27228248 Clacu08g1517 Clacu-Chr8:25057042 1.40E-52 wgd
Clacu05g1801 Clacu-Chr5:27228248 Clacu09g0321 Clacu-Chr9:2738569 2.90E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47718 PF00847 AP2 6.80E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1801 - - - 0.0