Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1807 ATGACCAGGTGCTGCAGTGAGAAGCCGGGGAGGACCTTTCCCCCTTTATCTCTCTCTATTATTTGTTATTACTGCAACAAAGAACTGATCCACCGCCATGGCTACATAATCACTGACCCATTTCTCAAATACCTCGTTTCCTTCTCTCTCCCCTTTCCCATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCGGTCGATCAATTACCGAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAAGTCAACAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1566 49.62 MTRCCSEKPGRTFPPLSLSIICYYCNKELIHRHGYIITDPFLKYLVSFSLPFPMAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVNSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27318396 27324359 + ClG42_05g0180700.10 Clacu05g1807 249554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1807 521 ProSiteProfiles ELK domain profile. 412 432 IPR005539 GO:0003677(InterPro)
Clacu05g1807 521 FunFam homeobox protein knotted-1-like 3 isoform X1 433 494 - -
Clacu05g1807 521 MobiDBLite consensus disorder prediction 507 521 - -
Clacu05g1807 521 SMART KNOX1_2 243 287 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g1807 521 SMART HOX_1 434 499 IPR001356 GO:0003677(InterPro)
Clacu05g1807 521 CDD homeodomain 435 496 IPR001356 GO:0003677(InterPro)
Clacu05g1807 521 MobiDBLite consensus disorder prediction 489 521 - -
Clacu05g1807 521 MobiDBLite consensus disorder prediction 86 115 - -
Clacu05g1807 521 MobiDBLite consensus disorder prediction 489 506 - -
Clacu05g1807 521 Pfam KNOX1 domain 245 286 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g1807 521 SUPERFAMILY Homeodomain-like 434 498 IPR009057 -
Clacu05g1807 521 SMART ELK_2 412 433 IPR005539 GO:0003677(InterPro)
Clacu05g1807 521 ProSiteProfiles 'Homeobox' domain profile. 432 495 IPR001356 GO:0003677(InterPro)
Clacu05g1807 521 Pfam KNOX2 domain 304 354 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g1807 521 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 189 503 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu05g1807 521 Pfam Homeobox KN domain 452 491 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu05g1807 521 SMART KNOX2_2 300 355 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g1807 521 Pfam ELK domain 412 433 IPR005539 GO:0003677(InterPro)
Clacu05g1807 521 Gene3D - 433 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1807 Clacu-Chr5:27318396 Clacu05g1924 Clacu-Chr5:28447496 4.60E-29 dispersed
Clacu01g0325 Clacu-Chr1:3218047 Clacu05g1807 Clacu-Chr5:27318396 6.60E-105 transposed
Clacu05g1807 Clacu-Chr5:27318396 Clacu08g1513 Clacu-Chr8:25002143 5.60E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47719 PF03791 KNOX2 2.20E-21 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1807 - - - 0.0