Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1821 ATGAAGATTCTCCCTTCAAGACCAAAGAAAGCCAGAGCATCTCTTCCTTTTCGCCTTGCCTCGAGGGCTTACGGGTCCGTGGGCACAGTTGAACAAGGCTCGTCTTTCTCCGAATCTTTCCTTATGTCGTTCTTTTCTGGTATCTTCCTCGGCGTTGTTGTCGGAGTCCTACTCATTATTGCTCTTGCTCGCGCCGGAAATGTTCGCGCCAAGCATCGCTCCGATTTGGCTACGACTATTGCGGCATTTGCAAGGATGACGGCACAGGACTCGAGAAAAATTCTTCCCAAGGAGTTTTATCCGTCGTGGGTCGTATTTACGCAGCGACAGAAGTTAACTTGGCTCAATCTTCAGCTTGATAAAATCTGGCCATATGTTGACGCGGCAGCATCGGAACTGATAAGGAGCAATGTGGAGCCGGTTCTAGAACAATTTCGACCGGCGATATTATCTTCTTTGAAGTTCTCAAAGTTGACCCTGGGTACTGTTGCTCCACATTTTACAGGAATTGCTGTACTTGAAGACGAGCCTGAATCCGGGGGAATAACTTTGGAGTTGGAGATGCAATGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATATTGCATTCACAGGGCTTTTCAGATTAATGTTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCAGTGTGTTATTCTCTGAGGAAAAAGAAAAATCTTGATTTTAAACTTAAGATTGTTGGAGGAGATATATCATCTATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATTCGAGATGCTATCGAAGGTACTATAACGTGGCCTGTTCGGATGATTGTGCCCATCATAGCAGGAGATTATAGCGATTTAGAGGCAAAGCCTGTTGGAACATTAGAAGTGAAGCTCGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCAGATCCTTATGCTGTGCTGTTTTTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCCATATGGAATGAGCACTTTGATTTCATTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAATTTTTGACGATGAAGGAGTTCAGGCCTCTGAACTAATTGGCTGTGCCCAAGTAGCACTAAAAGACCTCGAGCCCGGTAAAGTGAAGGATGTTTGGTTGAAGCTGGTCAAAGATTTGGACATCCAAAGAGATAACAAATACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCCTTCGGCACTGATCAGAGCCTCTATATAAACCCATTTAACCCAGATTATGCATTGACCTCAGTGGAGAAGGCTCTAAAAACGGCTCCGAATGGCTCAGAAGATGCAGATTCTGGAAAACCAAGCTCCCCAAAGAAGAGGGATGTGATTGTAAGAGGAGTGTTATCTGTGACAGTAATAGCTGCTGAAGATTTGCCTGCTGTAGATTTCATGGGAAAAGCTGACCCTTACGTTGTTCTCATTATGAAGAAATCCGAGACCAAAGTTAAAACCAGGGTTGTACATGACACCCTGAATCCTGTCTGGAATCAAACATTCGACTTTCTGGTGGAGGATGCATTACACGATATGCTAATGGTAGAGGTCTGGGATCATGATACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACATTGACAAGAGCGATATTGGAAGGGGAAATTCAGGACTGTTTTCCACTGGAAGGAGCCAAATCAGGACGGGTTTATCTGCATCTCAAATGGGCAGCTCAGCCAATTTTCCGAGATATTTGA 1833 43.37 MKILPSRPKKARASLPFRLASRAYGSVGTVEQGSSFSESFLMSFFSGIFLGVVVGVLLIIALARAGNVRAKHRSDLATTIAAFARMTAQDSRKILPKEFYPSWVVFTQRQKLTWLNLQLDKIWPYVDAAASELIRSNVEPVLEQFRPAILSSLKFSKLTLGTVAPHFTGIAVLEDEPESGGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDIAFTGLFRLMFKPLVDEFPCFGAVCYSLRKKKNLDFKLKIVGGDISSIPGVSDAIEETIRDAIEGTITWPVRMIVPIIAGDYSDLEAKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFLRPLKERMKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRIFDDEGVQASELIGCAQVALKDLEPGKVKDVWLKLVKDLDIQRDNKYRGQVHLELLYYPFGTDQSLYINPFNPDYALTSVEKALKTAPNGSEDADSGKPSSPKKRDVIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLIMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDMLMVEVWDHDTFGKDKLGRVIMTLTRAILEGEIQDCFPLEGAKSGRVYLHLKWAAQPIFRDI 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27502256 27509224 + ClG42_05g0182100.10 Clacu05g1821 249568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1821 610 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 111 292 IPR039010 -
Clacu05g1821 610 SMART C2_3c 486 584 IPR000008 -
Clacu05g1821 610 SMART C2_3c 306 406 IPR000008 -
Clacu05g1821 610 FunFam Extended synaptotagmin-2 466 605 - -
Clacu05g1821 610 ProSiteProfiles C2 domain profile. 286 407 IPR000008 -
Clacu05g1821 610 CDD C2 487 587 - -
Clacu05g1821 610 Gene3D C2 domain 301 441 IPR035892 -
Clacu05g1821 610 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 41 604 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
Clacu05g1821 610 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 108 292 IPR031468 GO:0008289(InterPro)
Clacu05g1821 610 CDD C2 307 409 - -
Clacu05g1821 610 PRINTS C2 domain signature 528 541 IPR000008 -
Clacu05g1821 610 PRINTS C2 domain signature 502 514 IPR000008 -
Clacu05g1821 610 PRINTS C2 domain signature 550 558 IPR000008 -
Clacu05g1821 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 601 IPR035892 -
Clacu05g1821 610 CDD SMP_SYT 101 291 - -
Clacu05g1821 610 Pfam C2 domain 305 409 IPR000008 -
Clacu05g1821 610 Pfam C2 domain 485 582 IPR000008 -
Clacu05g1821 610 Gene3D C2 domain 474 603 IPR035892 -
Clacu05g1821 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 303 434 IPR035892 -
Clacu05g1821 610 ProSiteProfiles C2 domain profile. 468 585 IPR000008 -
Clacu05g1821 610 FunFam Plant synaptotagmin 300 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1821 K28063 - - csv:101210249 1056.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1821 Clacu-Chr5:27502256 Clacu06g0027 Clacu-Chr6:510309 3.00E-72 dispersed
Clacu11g0467 Clacu-Chr11:4467795 Clacu05g1821 Clacu-Chr5:27502256 8.80E-236 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70