Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1837 ATGGCGCCTAGTACGATCCGGAAGGCGATCGGGGCCGTGAAGGACCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATATGGCGCCGGACCTCGAGGTAGCGATCGTGAAGGCGACGAGCCATGACGATGATCCGGCCAGTGAGAAGTACATCAGGGAGATTTTGAGCCTCACATCATATTCTCGTGGATATGTGAGTGCGTGTGTGTCGGCAATTTCGAAGCGTCTGGCGAAGACGAGGGACTGGATTGTGGCGCTCAAGGCACTCATACTTGTGCACAGATTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCTACTAGAAGGGGCACGAGGCTGTTGAATATGTCTGATTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTGTTCGAACTTATGCATTCTACTTGGATCAAAGGCTGGAATTGATGTTGTTTGAGAAGAAAGGTGGTAGTGCAAGGGGAAATTCCCGTGGGGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCACCTCCGAGGCCCTACGATAACGGTTACAGTGAGCATAGAGGAGAAAGAGAGTATGGAAATTATGGTGGGATGAGGAGGTCGAGATCTTATGGTGATGTGGGGGAATCTGTGGGGAGGGATGGGCAGGGGCGTAACAACAAGGGGCCTGTGACCCCGTTGAGGGAAATGGCGATTGAGAGAGTTTTCGGGAAGATGGGACATTTGCAGAGACTGTTGGATAGATTCTTGTCGTGTCGTCCAACGGGGTTGGCGAAGAACAGTAGGATGATTTTGTATGCTTTGTATCCTCTAGTGAGGGAGAGTTTTCAATTGTATGCAGATATTTGTGAGGTTTTGGCTGTTTTGCTTGACAAATTCTTTGATATGGAGTACTCTGACTGTATGAAGGCATTTGATGCATATGGTAGTGCAGCTAAGCAGATTGATGAGCTAATTGCATTCTATAATTGGTGTAAAGATACAGGAGTTGCTAGATCCTCTGAGTATCCAGAGGTGCAAAGAATCACCAGCAAGTTACTGGAGACATTGGAGGAGTTTTTGAGGGAAAGAGGGAAGAGGCCGAAGAGTCCTGAGAGGGAGCCGCCTCCGCCTGCTCCTGAAGAGGAAGAACCAGTGCCTGATATGAATGAAATAAAAGCTCTTCCTCCACCTGAAAATTACACTCCACCTCCGCCTGAGCCTGAGCCCCAGCCTGCGCCCAAACCTCAACCACAAGTCACGGAAGACTTGGTCAATCTGAGAGATGATGCAGTCAGTGCAGATGATCAAGGCAATAAACTGGCATTGGCTCTATTTGCTGGTCCAGCAGCTAATGGTGCAAATGGATCCTGGGAAGCTTTCCCTTCCGATGGACAGCCAGAAGTAACCTCTGCCTGGCAGACCCCGGCTGCTGAACCTGGCAAAGCTGATTGGGAGTTGGCTTTGGTTGAGACAGCAAGCAATTTATCGAGGCAGAAGGCAGCACTTGGCGGTGGACTCGACCCATTGTTGTTAAATGGCATGTATGATCAAGGAATGGTTAGGCAGCACACTAGCACTGCACAGCTGAGCGGTGGAAGCGCTAGTAGTGTAGCATTGCCCGGCCCCGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCAGATGGAACTGTTCAGGCAGTGAATCAGGATCCTTTCGCAGCATCATTAAGTGTGCCACCTCCTTCTTATGTGCAGATGGTGGAGATGGAGAAGAAACAGCATCTGCTGATGCAGGAACAGCAGTTATGGCAGCAATATGCAAGAGATGGGATGCAGGGGCAGAGCAGTTTGAACAAAATCAGTAACCCCCCAGGTTACTACAACGCAGCCATGGCACCAATGGCTCCGATGCCCTATGGAATGCCTCCAATGAACGGCATGGGCGGGTATTACTACGTTCCTCAATGA 1956 49.74 MAPSTIRKAIGAVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVSAISKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFVRTYAFYLDQRLELMLFEKKGGSARGNSRGDDRFDGRDDFRSPPPRPYDNGYSEHRGEREYGNYGGMRRSRSYGDVGESVGRDGQGRNNKGPVTPLREMAIERVFGKMGHLQRLLDRFLSCRPTGLAKNSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDCMKAFDAYGSAAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKRPKSPEREPPPPAPEEEEPVPDMNEIKALPPPENYTPPPPEPEPQPAPKPQPQVTEDLVNLRDDAVSADDQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHLLMQEQQLWQQYARDGMQGQSSLNKISNPPGYYNAAMAPMAPMPYGMPPMNGMGGYYYVPQ 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27633433 27635388 + ClG42_05g0183700.10 Clacu05g1837 249584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1837 651 Gene3D - 2 155 IPR008942 -
Clacu05g1837 651 SMART enth_2 30 160 IPR013809 -
Clacu05g1837 651 Gene3D ANTH domain 225 370 IPR014712 GO:0005545(InterPro)|GO:0030136(InterPro)|GO:0030276(InterPro)|GO:0048268(InterPro)
Clacu05g1837 651 MobiDBLite consensus disorder prediction 361 380 - -
Clacu05g1837 651 MobiDBLite consensus disorder prediction 361 419 - -
Clacu05g1837 651 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Clacu05g1837 651 MobiDBLite consensus disorder prediction 524 543 - -
Clacu05g1837 651 FunFam Clathrin coat assembly protein 3 156 - -
Clacu05g1837 651 CDD ANTH_N_AP180_plant 32 152 IPR048050 -
Clacu05g1837 651 PANTHER CLATHRIN ASSEMBLY PROTEIN 3 607 IPR045192 GO:0000149(PANTHER)|GO:0005545(PANTHER)|GO:0005546(PANTHER)|GO:0005905(PANTHER)|GO:0006900(PANTHER)|GO:0030136(PANTHER)|GO:0032050(PANTHER)|GO:0048268(InterPro)|GO:0072583(PANTHER)|GO:0072583(InterPro)
Clacu05g1837 651 MobiDBLite consensus disorder prediction 397 417 - -
Clacu05g1837 651 MobiDBLite consensus disorder prediction 160 202 - -
Clacu05g1837 651 SUPERFAMILY GAT-like domain 233 363 - -
Clacu05g1837 651 FunFam putative clathrin assembly protein At2g25430 228 373 - -
Clacu05g1837 651 MobiDBLite consensus disorder prediction 160 182 - -
Clacu05g1837 651 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Clacu05g1837 651 Pfam ANTH domain 31 363 IPR011417 GO:0005543(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1837 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1238 Clacu-Chr6:23198812 Clacu05g1837 Clacu-Chr5:27633433 1.50E-52 transposed
Clacu07g0599 Clacu-Chr7:9397120 Clacu05g1837 Clacu-Chr5:27633433 4.80E-64 transposed
Clacu09g1120 Clacu-Chr9:10735639 Clacu05g1837 Clacu-Chr5:27633433 3.60E-78 transposed
Clacu09g1395 Clacu-Chr9:18858888 Clacu05g1837 Clacu-Chr5:27633433 5.20E-125 transposed
Clacu11g0247 Clacu-Chr11:2240237 Clacu05g1837 Clacu-Chr5:27633433 6.30E-23 transposed
Clacu11g1368 Clacu-Chr11:23899076 Clacu05g1837 Clacu-Chr5:27633433 3.20E-58 transposed
Clacu05g1837 Clacu-Chr5:27633433 Clacu06g1221 Clacu-Chr6:22917927 2.40E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81