Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1844 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCACTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGACCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTTCAATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATGCCGTCCCCGTCCCTGTCGCCTGAATTGACAAGCCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA 573 49.74 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSSMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEMPSPSLSPELTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27697131 27698297 + ClG42_05g0184400.10 Clacu05g1844 249591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1844 190 MobiDBLite consensus disorder prediction 141 163 - -
Clacu05g1844 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Clacu05g1844 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1844 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 116 IPR050913 -
Clacu05g1844 190 MobiDBLite consensus disorder prediction 59 84 - -
Clacu05g1844 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1844 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1844 190 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1844 190 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1844 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1844 190 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Clacu05g1844 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1844 Clacu-Chr5:27697131 Clacu07g1270 Clacu-Chr7:27540030 3.30E-49 dispersed
Clacu11g0441 Clacu-Chr11:4146823 Clacu05g1844 Clacu-Chr5:27697131 3.50E-56 wgd
Clacu05g1844 Clacu-Chr5:27697131 Clacu06g1202 Clacu-Chr6:22624641 1.50E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47722 PF00847 AP2 3.80E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1844 - - - 0.0