Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1860 | ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGAGATCAATGTGCGGGAGAGAGCAAGAGCGAGAGATAGAGCAATTATCGAGAGACGATGGCAGCCAATACAGTCTCACCGGCGGAATCCTTCCGCCGCTTGGCGTAAATGGGCGAAATAAAGGAAGAGTCAAACTCCGTAGTCATACAATTTCGCCATTCGATTACAATTACAGACTTTGGGAAACGTTTTTGATATTTCTAGTACTGTACACCGCCTGGGTTTGTCCGTTTGAGTTCGGGTTCATTCCTTCACCACACGGAGCTCTTGCTGTGATCGATAACGTTGTAAATGGCATATTCGCCATTGATATAGTTTTGACCTTCTTCGTGGCATATTTGGACAAAACTACTTACCTGCTCGTGGATGATCGGAAGCTGATTGCTCTGCGATATGCGAAAACCTGGTTGATTTTCGACGTTGTGTCAATTATTCCGTCGGAAATGGCTCGTGCTATTCTTCCTCCTTCTCTTCAAACTTATGGCTACTTCAATATGCTCCGTCTATGGCGTCTTCGAAGAGTGAGTTCCATGTTCGCCAGGTTGGAAAAGGATAGGAACTTCAACTATTTCTGGGTTCGATGCGCAAAGCTTATATTTGTGTGTCTATTCACGGTTCATTTTGCTGGGTGCTGCTTCTATCTAATGGCTGCAAACTATCCAGACCCAAAAAGGACATGGTTAGCCTTATCCATCGAAGATTTTCATAACGCAAGTTTGCGAGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACAACCACTGGCTATGGCGATTTGCATCCGGTAAATGATCAAGAAATGACTTTTGGCATCTGTTACCTCTTCTTTATTCTCGGCTTGCAAGCTTACCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACCGGCCGAACCAGGAAATTTAGGGACACAATTCAAGCTGCCTCGAATTTTGCCCATAGAAATCAACTACCTGTTCGTCTTCAAGAACAGATGCTCGCTCATCTATGTTTGAAATTCAGAACTGATTCAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCGAAAGCCATCAGATCTGGCATCGCTCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTCATGGAGTGTCAACAGACTTGATTTTTCAACTGGTTACTGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGATATCATCTTGGAGAATGAAGCACCAACAGATTTATATATAGTTGTCACTGGCACTGCGGATCTTATTATACAAAGAAACGGAATGGAAGAGATTGTTGGCGAAGCAAAGATGGGAGATGTCATTGGCGAGATAGGTGTGCTTTGTTATCAACCACAATTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGCTGCGCTTGAATCGCTCCTCGTTTTTTAACTTGGTGCAAGCAAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCCGTGATGGAGGACATTCTACAAGAAACAGAACAGACATTGACTAAGGCCGGAATGGAAATGCCTCTCAATTTATGCTATGCCGCAGACAGTGGCGATGATATATTGTTGAATCAATTGCTAAAGCGGGGTTCGAATCCAAATGAAGTAGATGGCAATGTCGGGAAGACAGCACTTCATATTGCAGCAGCTAAAGGAAACGAACACTGCGTAGCTCTACTCCTAGAGTATGGGGCAGACCCGAACAGAAGAGACTTTGATGGAAACGTACCCCTGTGGCAAGCAATACAAGGGAAGCATGAGTCTATAGTCAAGCTTCTAATGGACAACGGTGCCAATATTTCTTCAGGCGACGTTGCCCAGTTTGCTTGCACCGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCATCATCCAATGTGGTGGAGACGTAACACTGCCAAGAAGCAATGGGACAACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACAGTGAAGTTTCTTTTAGATCAGGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGTGAATACATCATCTGTTGTCCATATTCCACAAAATCCTGAATCAAATTACCTACGGAAGTACCAGAGTGAATCAAACATGCCACCACGGTTTTCCCAAGACTCATGCACGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGCGAAGGAGCAATAATTATCAAAACTCACTAGTTGGGTTCATGACAACTAACAATAGAGGTGAAAGGGAAATTTTACAATCTGCATCGCTCAGTTTTAACAATAGCCGAAGCATGAGAACCACTTACCAGGCAAGAATTACTCTCAGTTGCCCTGAAACTGGACAGGCTACTGGAAAGCTAGTGTTTTTACCCAAGTCTATCCAAGAACTACTTGAAATAGGTTCCAAAAAATTTGGGATCTCCGTAGCAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATACTGACCTTATCAGAGACGGCGATCACCTCATACTTGTTGGTGATGCTGGTGCTCCCCAGTAG | 2670 | 43.6 | MSKQKSKKMGLLGRSMCGREQEREIEQLSRDDGSQYSLTGGILPPLGVNGRNKGRVKLRSHTISPFDYNYRLWETFLIFLVLYTAWVCPFEFGFIPSPHGALAVIDNVVNGIFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLIFDVVSIIPSEMARAILPPSLQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLIFVCLFTVHFAGCCFYLMAANYPDPKRTWLALSIEDFHNASLRVRYVTSIYWSIVTITTTGYGDLHPVNDQEMTFGICYLFFILGLQAYLIGNMTNLVVHGTGRTRKFRDTIQAASNFAHRNQLPVRLQEQMLAHLCLKFRTDSEGLQQQETVDSLPKAIRSGIAHHLFYSLVDSAYLFHGVSTDLIFQLVTEMKAEYFPPKEDIILENEAPTDLYIVVTGTADLIIQRNGMEEIVGEAKMGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEIKDPVMEDILQETEQTLTKAGMEMPLNLCYAADSGDDILLNQLLKRGSNPNEVDGNVGKTALHIAAAKGNEHCVALLLEYGADPNRRDFDGNVPLWQAIQGKHESIVKLLMDNGANISSGDVAQFACTAAEQNSIDMLKSIIQCGGDVTLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKADVHGWTPRGLADHQGHEEIKELFSVKQAVNTSSVVHIPQNPESNYLRKYQSESNMPPRFSQDSCTTPVRESNCSDMPPRRRRSNNYQNSLVGFMTTNNRGEREILQSASLSFNNSRSMRTTYQARITLSCPETGQATGKLVFLPKSIQELLEIGSKKFGISVAKILTQEGAEVEDTDLIRDGDHLILVGDAGAPQ | 889 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27823220 | 27830811 | + | ClG42_05g0186000.10 | Clacu05g1860 | 249607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1860 | 889 | PRINTS | Ankyrin repeat signature | 568 | 583 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | PRINTS | Ankyrin repeat signature | 680 | 694 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | SUPERFAMILY | cAMP-binding domain-like | 314 | 508 | IPR018490 | - | |
| Clacu05g1860 | 889 | Pfam | Ankyrin repeats (3 copies) | 538 | 629 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | Pfam | Ankyrin repeats (3 copies) | 638 | 716 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | Gene3D | - | 534 | 719 | IPR036770 | - | |
| Clacu05g1860 | 889 | CDD | CAP_ED | 388 | 491 | IPR000595 | - | |
| Clacu05g1860 | 889 | ProSiteProfiles | KHA domain profile. | 819 | 889 | IPR021789 | - | |
| Clacu05g1860 | 889 | SMART | ANK_2a | 567 | 596 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | SMART | ANK_2a | 631 | 660 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | SMART | ANK_2a | 600 | 629 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | SMART | ANK_2a | 664 | 693 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | SMART | ANK_2a | 533 | 562 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | ProSiteProfiles | Ankyrin repeat region circular profile. | 567 | 598 | - | - | |
| Clacu05g1860 | 889 | ProSiteProfiles | Ankyrin repeat profile. | 600 | 632 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | Pfam | Ion transport protein | 70 | 314 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu05g1860 | 889 | PRINTS | EAG/ELK/ERG potassium channel family signature | 83 | 90 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1860 | 889 | PRINTS | EAG/ELK/ERG potassium channel family signature | 106 | 116 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1860 | 889 | PRINTS | EAG/ELK/ERG potassium channel family signature | 117 | 126 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1860 | 889 | PRINTS | EAG/ELK/ERG potassium channel family signature | 256 | 273 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1860 | 889 | PRINTS | EAG/ELK/ERG potassium channel family signature | 300 | 309 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1860 | 889 | SMART | cnmp_10 | 388 | 505 | IPR000595 | - | |
| Clacu05g1860 | 889 | ProSiteProfiles | Ankyrin repeat region circular profile. | 664 | 695 | - | - | |
| Clacu05g1860 | 889 | ProSiteProfiles | Ankyrin repeat profile. | 664 | 696 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | ProSiteProfiles | Ankyrin repeat profile. | 567 | 599 | IPR002110 | GO:0005515(InterPro) | |
| Clacu05g1860 | 889 | FunFam | Potassium channel KAT3 | 72 | 310 | - | - | |
| Clacu05g1860 | 889 | Pfam | KHA, dimerisation domain of potassium ion channel | 819 | 881 | IPR021789 | - | |
| Clacu05g1860 | 889 | PANTHER | POTASSIUM CHANNEL AKT1 | 25 | 880 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Clacu05g1860 | 889 | ProSiteProfiles | Ankyrin repeat region circular profile. | 600 | 631 | - | - | |
| Clacu05g1860 | 889 | Gene3D | Jelly Rolls | 356 | 528 | IPR014710 | - | |
| Clacu05g1860 | 889 | Pfam | Cyclic nucleotide-binding domain | 407 | 492 | IPR000595 | - | |
| Clacu05g1860 | 889 | FunFam | Potassium channel KAT2 | 376 | 512 | - | - | |
| Clacu05g1860 | 889 | SUPERFAMILY | Ankyrin repeat | 516 | 717 | IPR036770 | - | |
| Clacu05g1860 | 889 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 388 | 490 | IPR000595 | - | |
| Clacu05g1860 | 889 | MobiDBLite | consensus disorder prediction | 746 | 778 | - | - | |
| Clacu05g1860 | 889 | SUPERFAMILY | Voltage-gated potassium channels | 65 | 309 | - | - | |
| Clacu05g1860 | 889 | Gene3D | - | 71 | 309 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g1860 | Clacu-Chr5:27823220 | Clacu06g1155 | Clacu-Chr6:21956845 | 1.50E-306 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1860 | K21867 | - | csv:101217334 | 1476.07 |