Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1860 ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGAGATCAATGTGCGGGAGAGAGCAAGAGCGAGAGATAGAGCAATTATCGAGAGACGATGGCAGCCAATACAGTCTCACCGGCGGAATCCTTCCGCCGCTTGGCGTAAATGGGCGAAATAAAGGAAGAGTCAAACTCCGTAGTCATACAATTTCGCCATTCGATTACAATTACAGACTTTGGGAAACGTTTTTGATATTTCTAGTACTGTACACCGCCTGGGTTTGTCCGTTTGAGTTCGGGTTCATTCCTTCACCACACGGAGCTCTTGCTGTGATCGATAACGTTGTAAATGGCATATTCGCCATTGATATAGTTTTGACCTTCTTCGTGGCATATTTGGACAAAACTACTTACCTGCTCGTGGATGATCGGAAGCTGATTGCTCTGCGATATGCGAAAACCTGGTTGATTTTCGACGTTGTGTCAATTATTCCGTCGGAAATGGCTCGTGCTATTCTTCCTCCTTCTCTTCAAACTTATGGCTACTTCAATATGCTCCGTCTATGGCGTCTTCGAAGAGTGAGTTCCATGTTCGCCAGGTTGGAAAAGGATAGGAACTTCAACTATTTCTGGGTTCGATGCGCAAAGCTTATATTTGTGTGTCTATTCACGGTTCATTTTGCTGGGTGCTGCTTCTATCTAATGGCTGCAAACTATCCAGACCCAAAAAGGACATGGTTAGCCTTATCCATCGAAGATTTTCATAACGCAAGTTTGCGAGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACAACCACTGGCTATGGCGATTTGCATCCGGTAAATGATCAAGAAATGACTTTTGGCATCTGTTACCTCTTCTTTATTCTCGGCTTGCAAGCTTACCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACCGGCCGAACCAGGAAATTTAGGGACACAATTCAAGCTGCCTCGAATTTTGCCCATAGAAATCAACTACCTGTTCGTCTTCAAGAACAGATGCTCGCTCATCTATGTTTGAAATTCAGAACTGATTCAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCGAAAGCCATCAGATCTGGCATCGCTCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTCATGGAGTGTCAACAGACTTGATTTTTCAACTGGTTACTGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGATATCATCTTGGAGAATGAAGCACCAACAGATTTATATATAGTTGTCACTGGCACTGCGGATCTTATTATACAAAGAAACGGAATGGAAGAGATTGTTGGCGAAGCAAAGATGGGAGATGTCATTGGCGAGATAGGTGTGCTTTGTTATCAACCACAATTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGCTGCGCTTGAATCGCTCCTCGTTTTTTAACTTGGTGCAAGCAAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCCGTGATGGAGGACATTCTACAAGAAACAGAACAGACATTGACTAAGGCCGGAATGGAAATGCCTCTCAATTTATGCTATGCCGCAGACAGTGGCGATGATATATTGTTGAATCAATTGCTAAAGCGGGGTTCGAATCCAAATGAAGTAGATGGCAATGTCGGGAAGACAGCACTTCATATTGCAGCAGCTAAAGGAAACGAACACTGCGTAGCTCTACTCCTAGAGTATGGGGCAGACCCGAACAGAAGAGACTTTGATGGAAACGTACCCCTGTGGCAAGCAATACAAGGGAAGCATGAGTCTATAGTCAAGCTTCTAATGGACAACGGTGCCAATATTTCTTCAGGCGACGTTGCCCAGTTTGCTTGCACCGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCATCATCCAATGTGGTGGAGACGTAACACTGCCAAGAAGCAATGGGACAACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACAGTGAAGTTTCTTTTAGATCAGGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGTGAATACATCATCTGTTGTCCATATTCCACAAAATCCTGAATCAAATTACCTACGGAAGTACCAGAGTGAATCAAACATGCCACCACGGTTTTCCCAAGACTCATGCACGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGCGAAGGAGCAATAATTATCAAAACTCACTAGTTGGGTTCATGACAACTAACAATAGAGGTGAAAGGGAAATTTTACAATCTGCATCGCTCAGTTTTAACAATAGCCGAAGCATGAGAACCACTTACCAGGCAAGAATTACTCTCAGTTGCCCTGAAACTGGACAGGCTACTGGAAAGCTAGTGTTTTTACCCAAGTCTATCCAAGAACTACTTGAAATAGGTTCCAAAAAATTTGGGATCTCCGTAGCAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATACTGACCTTATCAGAGACGGCGATCACCTCATACTTGTTGGTGATGCTGGTGCTCCCCAGTAG 2670 43.6 MSKQKSKKMGLLGRSMCGREQEREIEQLSRDDGSQYSLTGGILPPLGVNGRNKGRVKLRSHTISPFDYNYRLWETFLIFLVLYTAWVCPFEFGFIPSPHGALAVIDNVVNGIFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLIFDVVSIIPSEMARAILPPSLQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLIFVCLFTVHFAGCCFYLMAANYPDPKRTWLALSIEDFHNASLRVRYVTSIYWSIVTITTTGYGDLHPVNDQEMTFGICYLFFILGLQAYLIGNMTNLVVHGTGRTRKFRDTIQAASNFAHRNQLPVRLQEQMLAHLCLKFRTDSEGLQQQETVDSLPKAIRSGIAHHLFYSLVDSAYLFHGVSTDLIFQLVTEMKAEYFPPKEDIILENEAPTDLYIVVTGTADLIIQRNGMEEIVGEAKMGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEIKDPVMEDILQETEQTLTKAGMEMPLNLCYAADSGDDILLNQLLKRGSNPNEVDGNVGKTALHIAAAKGNEHCVALLLEYGADPNRRDFDGNVPLWQAIQGKHESIVKLLMDNGANISSGDVAQFACTAAEQNSIDMLKSIIQCGGDVTLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKADVHGWTPRGLADHQGHEEIKELFSVKQAVNTSSVVHIPQNPESNYLRKYQSESNMPPRFSQDSCTTPVRESNCSDMPPRRRRSNNYQNSLVGFMTTNNRGEREILQSASLSFNNSRSMRTTYQARITLSCPETGQATGKLVFLPKSIQELLEIGSKKFGISVAKILTQEGAEVEDTDLIRDGDHLILVGDAGAPQ 889
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 27823220 27830811 + ClG42_05g0186000.10 Clacu05g1860 249607
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1860 889 PRINTS Ankyrin repeat signature 568 583 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 PRINTS Ankyrin repeat signature 680 694 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 SUPERFAMILY cAMP-binding domain-like 314 508 IPR018490 -
Clacu05g1860 889 Pfam Ankyrin repeats (3 copies) 538 629 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 Pfam Ankyrin repeats (3 copies) 638 716 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 Gene3D - 534 719 IPR036770 -
Clacu05g1860 889 CDD CAP_ED 388 491 IPR000595 -
Clacu05g1860 889 ProSiteProfiles KHA domain profile. 819 889 IPR021789 -
Clacu05g1860 889 SMART ANK_2a 567 596 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 SMART ANK_2a 631 660 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 SMART ANK_2a 600 629 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 SMART ANK_2a 664 693 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 SMART ANK_2a 533 562 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 ProSiteProfiles Ankyrin repeat region circular profile. 567 598 - -
Clacu05g1860 889 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 Pfam Ion transport protein 70 314 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1860 889 PRINTS EAG/ELK/ERG potassium channel family signature 83 90 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1860 889 PRINTS EAG/ELK/ERG potassium channel family signature 106 116 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1860 889 PRINTS EAG/ELK/ERG potassium channel family signature 117 126 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1860 889 PRINTS EAG/ELK/ERG potassium channel family signature 256 273 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1860 889 PRINTS EAG/ELK/ERG potassium channel family signature 300 309 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1860 889 SMART cnmp_10 388 505 IPR000595 -
Clacu05g1860 889 ProSiteProfiles Ankyrin repeat region circular profile. 664 695 - -
Clacu05g1860 889 ProSiteProfiles Ankyrin repeat profile. 664 696 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 ProSiteProfiles Ankyrin repeat profile. 567 599 IPR002110 GO:0005515(InterPro)
Clacu05g1860 889 FunFam Potassium channel KAT3 72 310 - -
Clacu05g1860 889 Pfam KHA, dimerisation domain of potassium ion channel 819 881 IPR021789 -
Clacu05g1860 889 PANTHER POTASSIUM CHANNEL AKT1 25 880 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Clacu05g1860 889 ProSiteProfiles Ankyrin repeat region circular profile. 600 631 - -
Clacu05g1860 889 Gene3D Jelly Rolls 356 528 IPR014710 -
Clacu05g1860 889 Pfam Cyclic nucleotide-binding domain 407 492 IPR000595 -
Clacu05g1860 889 FunFam Potassium channel KAT2 376 512 - -
Clacu05g1860 889 SUPERFAMILY Ankyrin repeat 516 717 IPR036770 -
Clacu05g1860 889 ProSiteProfiles cAMP/cGMP binding motif profile. 388 490 IPR000595 -
Clacu05g1860 889 MobiDBLite consensus disorder prediction 746 778 - -
Clacu05g1860 889 SUPERFAMILY Voltage-gated potassium channels 65 309 - -
Clacu05g1860 889 Gene3D - 71 309 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1860 Clacu-Chr5:27823220 Clacu06g1155 Clacu-Chr6:21956845 1.50E-306 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1860 K21867 - csv:101217334 1476.07