Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1862 ATGATTGGTAGAGGATTCACTCCGACCCCGACTACCTATAACTATTTCTTCAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATAATTGAATCAGGATATGCATCAAATAAACTTACAGATCACTTGTTGCTGAAGATGTTATGTGAAGAAGAGAGATTAAACATTGCAATTCAAGTTTGCAATGAAATGAAGGCTGTAGGGTTTGACAAGGACTTGGCTACAAGCACCATGTTAGTTCATTTGCTTTGCAATATGCATAAATTTGAAGAAGCTTTTGAAGAATTTGAGCACATGATTCGTCAAGGAATTGTTCCTCAATATCATACTTATTGCAGATTGCATGATGAATTTATGAAACGTTGA 387 34.88 MIGRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKIIESGYASNKLTDHLLLKMLCEEERLNIAIQVCNEMKAVGFDKDLATSTMLVHLLCNMHKFEEAFEEFEHMIRQGIVPQYHTYCRLHDEFMKR 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27851653 27852039 - ClG42_05g0186200.10 Clacu05g1862 249609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1862 128 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 1 121 - -
Clacu05g1862 128 Gene3D Tetratricopeptide repeat domain 1 128 IPR011990 GO:0005515(InterPro)
Clacu05g1862 128 NCBIfam pentatricopeptide repeat 84 113 IPR002885 -
Clacu05g1862 128 NCBIfam pentatricopeptide repeat 12 42 IPR002885 -
Clacu05g1862 128 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Clacu05g1862 128 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Clacu05g1862 128 Pfam PPR repeat 12 40 IPR002885 -
Clacu05g1862 128 Pfam PPR repeat 82 111 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1862 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0136 Clacu-Chr5:1325948 Clacu05g1862 Clacu-Chr5:27851653 4.30E-07 dispersed
Clacu05g1862 Clacu-Chr5:27851653 Clacu05g1867 Clacu-Chr5:27875752 4.30E-13 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g433 Blo01g01369 . . . . . . . . . Cma01g01524 . . . . . . . . . . . . . Cla05g01756 . Cec05g1882 . Clacu05g1862 Cmu05g1743 Cre05g1873 . . . . Lsi04g02154 . . . . . . . . . . . . Cmo01g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016440 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 6