Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1865 ATGTCCGCCTCGAACATGGCGGCATCTCTAAGCTCTTGGTCCCACGCGCTCGTCAGAATCTCCCCTTACACCTTCTCCGCCATCGGCATTGCCATAGCCATCGGCGTCTCTGTCCTCGGAGCCGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATTTAATTAGTGTAATTTTCTGTGAAGCAGTGGCCATATATGGTGTCATTGTAGCCATCATTCTACAAACAAAACTGGAAACTGTTTCACCATCTCAAATTTATGCTCCTGAGTCTCTAAGAGCAGGATATTCAATTTTTGCTTCTGGGATTATCGTTGGCTTTGCCAATCTTGTTTGCGGGTTGTGTGTAGGGATTATTGGCAGCAGTTGTGCATTATCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTCGTGATCGAGATTTTTGGAAGCGCGCTCGGTTTATTTGGTATAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGAAAAGGCAGTTTAG 549 45.54 MSASNMAASLSSWSHALVRISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLETVSPSQIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGIIVGIIMSAQATWPEKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27870995 27872340 + ClG42_05g0186500.10 Clacu05g1865 249612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1865 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Clacu05g1865 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Clacu05g1865 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 11 175 - GO:0016021(PANTHER)
Clacu05g1865 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Clacu05g1865 182 Gene3D - 23 177 IPR035921 -
Clacu05g1865 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Clacu05g1865 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1865 K03661 - - csv:101205012 302.367
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1754 Clacu-Chr11:28716475 Clacu05g1865 Clacu-Chr5:27870995 1.20E-12 dispersed
Clacu05g1865 Clacu-Chr5:27870995 Clacu08g1455 Clacu-Chr8:24593408 3.20E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g414 . . Bda01g00727 . . . . . . . . . . . . . . . . . . . . . Cla05g01759 Cam05g1873 Cec05g1886 Cco05g1950 Clacu05g1865 Cmu05g1746 Cre05g1876 . . . Cone20ag0657 . . Chy04g00346 . . . . . . . . . . . . . . . . . Cpe02g00466 . . . . . . . . . . . . . . . . . Cme04g00385
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu09g0169 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu05g1557 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 8.7e-76 280.4
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28710 95.0 2.4e-194 674.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001947 2 4 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 1 2 1 2 2 3 3 2 66