Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1865 ATGTCCGCCTCGAACATGGCGGCATCTCTAAGCTCTTGGTCCCACGCGCTCGTCAGAATCTCCCCTTACACCTTCTCCGCCATCGGCATTGCCATAGCCATCGGCGTCTCTGTCCTCGGAGCCGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATTTAATTAGTGTAATTTTCTGTGAAGCAGTGGCCATATATGGTGTCATTGTAGCCATCATTCTACAAACAAAACTGGAAACTGTTTCACCATCTCAAATTTATGCTCCTGAGTCTCTAAGAGCAGGATATTCAATTTTTGCTTCTGGGATTATCGTTGGCTTTGCCAATCTTGTTTGCGGGTTGTGTGTAGGGATTATTGGCAGCAGTTGTGCATTATCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTCGTGATCGAGATTTTTGGAAGCGCGCTCGGTTTATTTGGTATAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGAAAAGGCAGTTTAG 549 45.54 MSASNMAASLSSWSHALVRISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLETVSPSQIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGIIVGIIMSAQATWPEKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27870995 27872340 + ClG42_05g0186500.10 Clacu05g1865 249612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1865 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Clacu05g1865 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Clacu05g1865 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 11 175 - GO:0016021(PANTHER)
Clacu05g1865 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Clacu05g1865 182 Gene3D - 23 177 IPR035921 -
Clacu05g1865 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Clacu05g1865 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu05g1865 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1754 Clacu-Chr11:28716475 Clacu05g1865 Clacu-Chr5:27870995 1.20E-12 dispersed
Clacu05g1865 Clacu-Chr5:27870995 Clacu08g1455 Clacu-Chr8:24593408 3.20E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1865 K03661 - csv:101205012 302.367