Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1867 ATGCCCATTCATCGTTCTAGTTTTCGAGTTTCAGCTCTGCAATTCTCCTCTTTGTCTGCTCGTTCATGGCTGTCCACGCCAGGAAAGCCCCTCATAAAATGGCCTTCACTACCTGACCAGTTCGACAATGCGGTGCAATCAAATTCTGCTGTGATTTCAAACCCTAACCCTGCCATTGACCTGAAATTTGAAGCATGTTTTGCACCAAATGACTTTTCTACCATTTCTCGCATCCTTTCCGAACGAGGTGTTCGGCCCGGTACAACGCTCGAGGATGCTTTGGACCGGACTGGAATTGTGCCGAGTTCGAGTTTGTTGGAAGCTGTGTTCGATCATTTTGATTCGTCTCCCAAGTTCTTGCACTCGCTGTTTCTTTGGGCTGAGAAGAAATCTGGATTTTGTTCCTCTGCGGCATTGTTCAATTGTCTGATCAACGTGCTTGCTAAATCGAGGGAGTTTGATTCTGCTTGGTCTTTGATTATTCGTCGTCTCCGTGGAGATGAAGAGTCCTCTTTGGTTTCAGTTGACGTGTTCGTGATATTGATTAGGCGGTACGCTCGTGCAGGCATGCTTCAACCTGCAATTCGAACTTTTGAATTTGCTCGCAACCTAGAAACAATTTCAGAGACCAACTCGGAGAGTTTGTTTGAGATTTTACTTGATTCACTCTGCAAAGAAGGCCATGTCAGGGTAGCTTATGAGTATTTCAATAGGAAAATGAATATGGATTCAAGTTTTGAACCATCAATTCGAGCATATAATATACTTCTAAATGGATGGTTTCGATCAAGAAAGCTCAAACATGCTGAGAGGCTTTGGTTTGAGATGAAGAAGAATAAAATATCTCCCTCTGTTGTTACGTATGGCACTCTTGTAGAAGGTTACTGTCGAATGCGTCGTGTTGAAAGAGCCATTGAATTGGTGGATGAGATGAAGGGAGAAGGTATTGAGCCAAATGCAATCATATATAACCCAATAGTTGATGCCCTTGGGGAAGCCGGGAGGTTTAAGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGGTATTGCAAGGCAGGAGATCTTTCTGGGGCTAGCAAGATCCTTAAGTCGATGATTGGTAGAGGATTCACTCCAACCCCGACTACCTATAACTACTTCTTTAGATTCTTCTCGAAGTATGGTAAAATTGAGGAGGGTATGAACCTTTACAATAAAATGATTGAATCAGGATATGCGCCAGATAAACTTACATATCACCTTTTGCTGAAGATGTTATGTGAAGAGGAGAGATTAAACCTTGCCGTTCAAGTTTGCAATGAAATGAAGGCTGGAGGGTTTGACATGGACTTGGCTACAAGCACCATGTTAGTTCATTTGCTTTGCAAGATGCATAAATTTGAAGAAGCTTTTGCAGAATTTGAGCACATGATTCATCGAGGAATTGTTCCTCAATATCTTACTTTCTGCCGATTGCATGATGAATTCATGAAACGTGGATTGACAAAAATGGCATCTAAGCTACAGGAAATGATGTCTTTGGTTCCTCATTCAAAGAAGTTACCCGATACGTATAATCAAACTCCTGATTCTATCCGTGCTAGAAGAACATCTATTATGCGTAAAGCTGAGGCAATGTCTGAAATGTTGAAGGTCTGTAAAGACCCTAGAGAGCTTGTTAAACGCAGAAGTCCATCTGAAAATGCTGTATTTAGTGCAAATAGGTTGATAGATGATATCAAGAAGAAAGCCAACCCTGTGACTGTTTGA 1797 42.13 MPIHRSSFRVSALQFSSLSARSWLSTPGKPLIKWPSLPDQFDNAVQSNSAVISNPNPAIDLKFEACFAPNDFSTISRILSERGVRPGTTLEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAEKKSGFCSSAALFNCLINVLAKSREFDSAWSLIIRRLRGDEESSLVSVDVFVILIRRYARAGMLQPAIRTFEFARNLETISETNSESLFEILLDSLCKEGHVRVAYEYFNRKMNMDSSFEPSIRAYNILLNGWFRSRKLKHAERLWFEMKKNKISPSVVTYGTLVEGYCRMRRVERAIELVDEMKGEGIEPNAIIYNPIVDALGEAGRFKEALGMMERFTVLEQGPTISTYNSLIKGYCKAGDLSGASKILKSMIGRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKAGGFDMDLATSTMLVHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGLTKMASKLQEMMSLVPHSKKLPDTYNQTPDSIRARRTSIMRKAEAMSEMLKVCKDPRELVKRRSPSENAVFSANRLIDDIKKKANPVTV 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27875752 27877838 - ClG42_05g0186700.10 Clacu05g1867 249614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1867 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Clacu05g1867 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Clacu05g1867 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Clacu05g1867 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Clacu05g1867 598 NCBIfam pentatricopeptide repeat 286 320 IPR002885 -
Clacu05g1867 598 NCBIfam pentatricopeptide repeat 392 424 IPR002885 -
Clacu05g1867 598 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Clacu05g1867 598 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Clacu05g1867 598 NCBIfam pentatricopeptide repeat 427 459 IPR002885 -
Clacu05g1867 598 NCBIfam pentatricopeptide repeat 357 389 IPR002885 -
Clacu05g1867 598 Gene3D Tetratricopeptide repeat domain 241 352 IPR011990 GO:0005515(InterPro)
Clacu05g1867 598 Gene3D Tetratricopeptide repeat domain 362 575 IPR011990 GO:0005515(InterPro)
Clacu05g1867 598 Pfam PPR repeat family 353 400 IPR002885 -
Clacu05g1867 598 Pfam PPR repeat family 248 297 IPR002885 -
Clacu05g1867 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Clacu05g1867 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Clacu05g1867 598 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 73 452 IPR051222 -
Clacu05g1867 598 Gene3D Tetratricopeptide repeat domain 106 240 IPR011990 GO:0005515(InterPro)
Clacu05g1867 598 Pfam PPR repeat 322 345 IPR002885 -
Clacu05g1867 598 Pfam PPR repeat 140 160 IPR002885 -
Clacu05g1867 598 Pfam PPR repeat 427 455 IPR002885 -
Clacu05g1867 598 Pfam PPR repeat 218 238 IPR002885 -
Clacu05g1867 598 Pfam PPR repeat 463 491 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1867 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0242 Clacu-Chr4:7522607 Clacu05g1867 Clacu-Chr5:27875752 5.70E-16 dispersed
Clacu05g1862 Clacu-Chr5:27851653 Clacu05g1867 Clacu-Chr5:27875752 4.30E-13 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g411 . Blo12g01086 . . . . . . . . . . . . . . . . . . . . . . Cla05g01760 Cam05g1875 Cec05g1887 Cco05g1951 Clacu05g1867 Cmu05g1748 Cre05g1877 Cone4ag1815 Cone7ag1724 . . . . . . . . . . . . . . . . . . . . . . Cpe02g00465 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002447 1 3 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 4 3 2 60