Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1869 ATGAGTAGGGAAAATGTTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCGTCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGACATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCTCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCACACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGGGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCTGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCGACGTTAACAGCTACGAAATCGGTTCTATCCCTATTTTGA 1455 40.89 MSRENVTVQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSHSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKFKCVATLTATKSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27892746 27897899 + ClG42_05g0186900.10 Clacu05g1869 249616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1869 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Clacu05g1869 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Clacu05g1869 484 Gene3D - 225 473 - -
Clacu05g1869 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Clacu05g1869 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu05g1869 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Clacu05g1869 484 SMART cyclin_7 358 446 IPR013763 -
Clacu05g1869 484 SMART cyclin_7 261 345 IPR013763 -
Clacu05g1869 484 FunFam Cyclin A1 341 473 - -
Clacu05g1869 484 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Clacu05g1869 484 PIRSF Cyclin_A_B_D_E 34 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Clacu05g1869 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Clacu05g1869 484 FunFam Mitotic cyclin 6 239 339 - -
Clacu05g1869 484 SMART Cyclin_C_2 354 477 IPR004367 -
Clacu05g1869 484 Gene3D - 239 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1869 Clacu-Chr5:27892746 Clacu09g0236 Clacu-Chr9:2184445 5.30E-112 dispersed
Clacu02g2308 Clacu-Chr2:36185997 Clacu05g1869 Clacu-Chr5:27892746 1.60E-45 transposed
Clacu04g0627 Clacu-Chr4:19855548 Clacu05g1869 Clacu-Chr5:27892746 1.90E-42 transposed
Clacu09g2301 Clacu-Chr9:37726086 Clacu05g1869 Clacu-Chr5:27892746 8.70E-35 transposed
Clacu11g2051 Clacu-Chr11:31446050 Clacu05g1869 Clacu-Chr5:27892746 5.50E-47 transposed
Clacu05g1869 Clacu-Chr5:27892746 Clacu08g1445 Clacu-Chr8:24473222 8.50E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1869 K06627 - csv:101204275 862.833