Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1870 ATGCAAAGTAGTCAATTGGACCCTATAACAAACAAAATGGAATCTTCACTATCAGAAGCTCCAAGAGGGGTTGCAGTTTCTTCCAATGATCCTTCTGTTCATCAATATTTAGTACCTAACAGGCAAATGGAACTAATGGAATCAATTTCTAGTGGCTCTCTAACTCAGAGTGGAATGCTATCACGCATGCAAAGAGGACAGGTTGATGGTAAAGCTGGGAATTTTGGACGGCAACAATTTCAAATACCTGGCAATCAATTTGGAGGGACTGGAAACATGGTGAGAACTGCGGAAGGGATGCTGTCACTTCCTGTGAAGCGCAAGGCATTGATCGAGCCTTTTAACTCTCTCTCACAGCAGTCTCCATTGCATAATAAGCGTGTTGCACCCATGGAACATCGACCATGGTTGCAACAAGCTTCTGGAATAGCCAAAATACCTCATTTACAAATACCAAACAATGCCCCAGCTCCTGTACCGGTGCATTCCCCTGCAGGAACCAAAAGGAAGGTACAACAAGTGGAATCACATCCAACTAAAGTTGGACATCAACGTTCCACTGCTTCCAAAGGGCAGACTGCTGCACAGACTCCAACTTCCAAAATACAAAATGAGCCAACTGGATCTGTGAGATCGAAGATGAGGGAATCCTTGACTTCTGCATTAGCATTGGTTTCACAGCAGCAAGACAAATCATCTAATGATGAAAAAAGTCCTCCCATCGAGGCTGAAAAATCTGCAACTCCAAAGCAGGAAAATCCTTTGTCATCTGGTCCAGCTATTGGTCATGAATCTGATGACTCGAAGAAAATCTTTTCTGAAAAAGTAGATTCTGTTGGTCTTGAAGACAATGTAGGAAAGATGTTAGATAAGAGTTCGCTATGTGTAAATGTTAGTGATTTAGAGACACTTAGATATGATGGACGTGTCTTTCAACCTAACAATGTTTTGTCGTATGAAGATATATCTTTTGGGGACAACTTCTTTATTAAAGACGATCTTTTACAAGAAAATGGTCTCTCCTGGGTGCTGGAGGCTGATTTAGGTGTAGCTGATAAAAAGGAAACTCAAACTGATGAACTTCAGAAGATCGATGTGGGTGTAGCAAATCCAAACCAGGGAGAAAAACCAGTTCAGACTCCCGAGTCTTTGGCATTTAAAATTGAAGAAGAATTATTTAAATTATTTGGTGGTGTTAATAAGAAGTACAAGGAAAAAGGAAGGTCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCTGAATTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCCGAAAGATTATGCTCGATGACTGCTGAAGAACTTGCTTCCAAGGAGCTCTCTGAGTGGAGAATGGCGAAGGCTGAAGAATTTGCACAAATGGTAGTTTTACCTGACTCTGAAGTTGATATTAGGCGTTTGGTAAAGAAGACACATAAAGGTGAATTCCAGGTAGAAGTTGAACAATACGATAATGCCCCCACAGATGTTTCATCTGGGGCTTCTACATTTTCTCAGAGTCAACGTAATAAGAATGAGAATGAAGATGATGGGTCTCCTGATGAACCCGAAACAGTTAAGGACGAGCAGAATATTTCTGGCCAGAAAAATGGTGCATCTGACAAGGATAATTACACCTTCACAATTCCTTCAAATGAAGGGTCCGATTTGATGCAAGGACTCATGGTTGATGATGGACTGAAGGATACGGAATTACTGCCTCCAATCGTCTCCCTGGATGAGTTCATGGAGTCCCTTGATACAGAGCCACCTTTTGATATTTTAGCCGAGGATGCTGGCAAATTGTCGCCTACTTTGGAGAAGGGTGAGTCGGAGCCTAGCTCTCAGTCAAAGGCTGCAGCTCATACTACGAAAGGCGCAACTGATGTTAGTACAGACAGTAATAAGAATAATGAGGAATCTCACACAAAAGCAGATATTGGCTCATCTTCTACCGGCCACGTGGATTTGAAACCTAGTCCTAGCAAAGCTGATGTTGATTCTAATGACAACCAAGCTGGTTTAGGAGCGTCTGACCGGAATGACACTAGAAAATCTAGTGATAGTGATATAAAATCTGGGACAGAATCTCTTGCTAGCACATTTAAGTTGGAACATCTATGGGATGGCATTCTCCAGTACAACATTTCAACAATGACTTCAGTTGTGGGTACCTACATAAGTGGTGAAAGGACTTCAGCGAAAGATTGGCCCGGGATTCTTGAGATTAAAGGGAGAGTCAGATTGGATGCGTTTGAGAAGTTTCTTCAAGAGCTTCCATTATCTCGGAGTCGTGCCGTTATGGTTCTTCATTTGGATGTGAAGGAGGGACGTCCTGAAAGTGAACGAGCAGATCTACGAGAGGTGGCCGAGTCGTATGTCGTGGACGAGCGAGTTGGTATAGCGGATCCTGGTTCTGGGGTTGAATTTTATTTTTGCCCTCCACATGGAAGAATTCTTGAAATGCTTGGCAGGATCCTTTTAAAGGAAACTAATGAGGCACTTAATGCACTTGAAAATGGCCTAATAGGCGTTGTTGTATGGAGAAAAACTCAATTAACGTCAATGTCACCAAACTCAACGTCACACCACAAACGCAGTTCAAAAAAGCAACATTTTAGTTCTAGAAGACCGCAGGAGACATCAAACTTGAAACCTAATAATATTTCCCCTAAACAGACTATGTCTCATGGCTATTTCCCTGTCCTCGCCACTCCTCATCCTCCGCCTGAGGAAGATGATGCTGATGGTGATGATGACGTCCCTCCCGGATTTGGTCCTTCAACTGCTCGGGATGAAGACGATCTTCCTGAATTTAACTTCTCTGGTTCTGCAAACCCTCCCGGGTTTTCTTCGCAGAACAACCACCACCATCCTACTCCTCAAGGGCAGCCATCTAGGCCACCCTCATTCCAACCAGTTTCCCAAACTGGGTCTCGTCCAGTAGAGCAAATGCGAGAGCTCGTGCACAAATATGGACAAAACTTAGGTAAAAACGCTGCCTACACCGTGAACTGGGGAGAAAGGAGTGGCTTCAGCTCGGTAGCCATCCAACCATGGAATGATGACGACGACGACATCCCCGAGTGGCAACCACAAGCAGTAGCAGCCTCACAACAACAAATGCCTCCTCCCTCGCACTCGCGGTTTCAGCAGCCGACGATTAGGCCTCACTACATGGTGAACCAACAGCAGCAGCCTGTAGGGGCCCGCCCTCCTTTAAATGTAGCTCAACAAGGGACGTGGTGGGTCCCTCAACAAGGCCACAACAACTTACACCCTAATAGCAATTTAAGTGGTAGTCATCATAATAGTAATGGTCAGTTTTATGGGGCATTTGGGAGATCAGCTCCTTCAAATAATAGAGGGTTTTGA 3381 43.95 MQSSQLDPITNKMESSLSEAPRGVAVSSNDPSVHQYLVPNRQMELMESISSGSLTQSGMLSRMQRGQVDGKAGNFGRQQFQIPGNQFGGTGNMVRTAEGMLSLPVKRKALIEPFNSLSQQSPLHNKRVAPMEHRPWLQQASGIAKIPHLQIPNNAPAPVPVHSPAGTKRKVQQVESHPTKVGHQRSTASKGQTAAQTPTSKIQNEPTGSVRSKMRESLTSALALVSQQQDKSSNDEKSPPIEAEKSATPKQENPLSSGPAIGHESDDSKKIFSEKVDSVGLEDNVGKMLDKSSLCVNVSDLETLRYDGRVFQPNNVLSYEDISFGDNFFIKDDLLQENGLSWVLEADLGVADKKETQTDELQKIDVGVANPNQGEKPVQTPESLAFKIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEEFAQMVVLPDSEVDIRRLVKKTHKGEFQVEVEQYDNAPTDVSSGASTFSQSQRNKNENEDDGSPDEPETVKDEQNISGQKNGASDKDNYTFTIPSNEGSDLMQGLMVDDGLKDTELLPPIVSLDEFMESLDTEPPFDILAEDAGKLSPTLEKGESEPSSQSKAAAHTTKGATDVSTDSNKNNEESHTKADIGSSSTGHVDLKPSPSKADVDSNDNQAGLGASDRNDTRKSSDSDIKSGTESLASTFKLEHLWDGILQYNISTMTSVVGTYISGERTSAKDWPGILEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDVKEGRPESERADLREVAESYVVDERVGIADPGSGVEFYFCPPHGRILEMLGRILLKETNEALNALENGLIGVVVWRKTQLTSMSPNSTSHHKRSSKKQHFSSRRPQETSNLKPNNISPKQTMSHGYFPVLATPHPPPEEDDADGDDDVPPGFGPSTARDEDDLPEFNFSGSANPPGFSSQNNHHHPTPQGQPSRPPSFQPVSQTGSRPVEQMRELVHKYGQNLGKNAAYTVNWGERSGFSSVAIQPWNDDDDDIPEWQPQAVAASQQQMPPPSHSRFQQPTIRPHYMVNQQQQPVGARPPLNVAQQGTWWVPQQGHNNLHPNSNLSGSHHNSNGQFYGAFGRSAPSNNRGF 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27907365 27912125 + ClG42_05g0187000.10 Clacu05g1870 249617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 532 557 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 610 636 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 493 511 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 879 897 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 488 557 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 590 695 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 857 982 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 150 268 - -
Clacu05g1870 1126 Pfam SPOC domain 705 851 IPR012921 -
Clacu05g1870 1126 ProSiteProfiles TFIIS central domain profile. 356 472 IPR003618 GO:0006351(InterPro)
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 1094 1126 - -
Clacu05g1870 1126 SUPERFAMILY Elongation factor TFIIS domain 2 377 448 IPR036575 GO:0006351(InterPro)
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 946 963 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 666 682 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 169 234 - -
Clacu05g1870 1126 Gene3D - 354 447 IPR036575 GO:0006351(InterPro)
Clacu05g1870 1126 SMART mid_6 347 455 IPR003618 GO:0006351(InterPro)
Clacu05g1870 1126 Pfam Transcription factor S-II (TFIIS), central domain 378 459 IPR003618 GO:0006351(InterPro)
Clacu05g1870 1126 CDD SPOC_TFIIS 709 850 - -
Clacu05g1870 1126 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 124 862 - -
Clacu05g1870 1126 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1870 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42