Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1886 | ATGTCGACACCAGTGTCCGAAACAAGGTCGCCGATACCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTCAACGATGGATATTCGCACCTGAACAAGTTCGTTATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGATATTTTGTTGACCTTCTTCGTGGCTTACTTGGATAAAGACACCTATCTTCTCGTTGATGATCATAAGAAGATAGCTGTACGTTACATTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTGATCTACAGAATTTTCACTGGAAAGATGCACCGCAGTGAGGTCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTCAGTTACTTTTTTACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGTTGGCAGTTCATCATAAAGAATCAGCAAACACATGGATTGGACTTGAAGTCGAAGATTTTAAGAACAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTCAATCTAGGGGAGAAGATTTTTAGCATCTTCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACATTCATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAGGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTGGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAGGACTGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCACAAATGGCAGGAGAAATTGCCGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAACTGTTACAACCACACAGTGAAGATGGAAAAACCATTTTCTCCAAGTTCATTGAGCACTTGAAGGGGTTAAAAAAGGAGGAGCAAAACGAAATACCCTGCTTGTCAGAATTGCTGGAAGACCTAAATACAGAGCACACAGAACTGAACCAGACACAAAATCAGGGAGTACCGAATTATCATGGAGATCAAAAAATGGAAGGATCTGGACCATTTCCACCTACAGCTCGCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAAGGGAAAACTGGTACTTCTGCCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTTATGGCTGATGGCTCTAAAGTAGAAGATTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA | 1887 | 43.08 | MSTPVSETRSPIPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDILLTFFVAYLDKDTYLLVDDHKKIAVRYITSLWFPMDVASTLPFQVIYRIFTGKMHRSEVFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFFTRLAKLICVTLLAVHSAGCFYYWLAVHHKESANTWIGLEVEDFKNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLRFKTAELKQEEVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYRTGTEQILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQLLQPHSEDGKTIFSKFIEHLKGLKKEEQNEIPCLSELLEDLNTEHTELNQTQNQGVPNYHGDQKMEGSGPFPPTARIRVIIHEHHPDESTKDGNSKGKLVLLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLREGDHLFFV | 628 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28045203 | 28052651 | - | ClG42_05g0188600.10 | Clacu05g1886 | 249633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1886 | 628 | PRINTS | EAG/ELK/ERG potassium channel family signature | 277 | 288 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1886 | 628 | PRINTS | EAG/ELK/ERG potassium channel family signature | 295 | 304 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1886 | 628 | PRINTS | EAG/ELK/ERG potassium channel family signature | 97 | 107 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1886 | 628 | PRINTS | EAG/ELK/ERG potassium channel family signature | 251 | 268 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1886 | 628 | PRINTS | EAG/ELK/ERG potassium channel family signature | 74 | 81 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1886 | 628 | PRINTS | EAG/ELK/ERG potassium channel family signature | 108 | 117 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1886 | 628 | ProSiteProfiles | KHA domain profile. | 559 | 628 | IPR021789 | - | |
| Clacu05g1886 | 628 | SMART | cnmp_10 | 381 | 498 | IPR000595 | - | |
| Clacu05g1886 | 628 | SUPERFAMILY | cAMP-binding domain-like | 310 | 495 | IPR018490 | - | |
| Clacu05g1886 | 628 | Coils | Coil | 505 | 535 | - | - | |
| Clacu05g1886 | 628 | Gene3D | Jelly Rolls | 349 | 513 | IPR014710 | - | |
| Clacu05g1886 | 628 | Pfam | KHA, dimerisation domain of potassium ion channel | 559 | 627 | IPR021789 | - | |
| Clacu05g1886 | 628 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 381 | 500 | IPR000595 | - | |
| Clacu05g1886 | 628 | SUPERFAMILY | Voltage-gated potassium channels | 56 | 304 | - | - | |
| Clacu05g1886 | 628 | Pfam | Cyclic nucleotide-binding domain | 401 | 484 | IPR000595 | - | |
| Clacu05g1886 | 628 | PANTHER | POTASSIUM CHANNEL AKT1 | 23 | 533 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Clacu05g1886 | 628 | FunFam | Potassium channel KAT2 | 369 | 505 | - | - | |
| Clacu05g1886 | 628 | CDD | CAP_ED | 381 | 493 | IPR000595 | - | |
| Clacu05g1886 | 628 | Gene3D | - | 63 | 305 | - | - | |
| Clacu05g1886 | 628 | Pfam | Ion transport protein | 61 | 305 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu05g1886 | 628 | FunFam | Potassium channel KAT3 | 63 | 305 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g1118 | Clacu-Chr5:10150267 | Clacu05g1886 | Clacu-Chr5:28045203 | 1.50E-130 | dispersed | |
| Clacu05g1886 | Clacu-Chr5:28045203 | Clacu06g1155 | Clacu-Chr6:21956845 | 4.90E-09 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1886 | K21867 | - | csv:101215177 | 1147.11 |