Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1886 ATGTCGACACCAGTGTCCGAAACAAGGTCGCCGATACCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTCAACGATGGATATTCGCACCTGAACAAGTTCGTTATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGATATTTTGTTGACCTTCTTCGTGGCTTACTTGGATAAAGACACCTATCTTCTCGTTGATGATCATAAGAAGATAGCTGTACGTTACATTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTGATCTACAGAATTTTCACTGGAAAGATGCACCGCAGTGAGGTCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTCAGTTACTTTTTTACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGTTGGCAGTTCATCATAAAGAATCAGCAAACACATGGATTGGACTTGAAGTCGAAGATTTTAAGAACAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTCAATCTAGGGGAGAAGATTTTTAGCATCTTCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACATTCATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAGGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTGGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAGGACTGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCACAAATGGCAGGAGAAATTGCCGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAACTGTTACAACCACACAGTGAAGATGGAAAAACCATTTTCTCCAAGTTCATTGAGCACTTGAAGGGGTTAAAAAAGGAGGAGCAAAACGAAATACCCTGCTTGTCAGAATTGCTGGAAGACCTAAATACAGAGCACACAGAACTGAACCAGACACAAAATCAGGGAGTACCGAATTATCATGGAGATCAAAAAATGGAAGGATCTGGACCATTTCCACCTACAGCTCGCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAAGGGAAAACTGGTACTTCTGCCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTTATGGCTGATGGCTCTAAAGTAGAAGATTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA 1887 43.08 MSTPVSETRSPIPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDILLTFFVAYLDKDTYLLVDDHKKIAVRYITSLWFPMDVASTLPFQVIYRIFTGKMHRSEVFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFFTRLAKLICVTLLAVHSAGCFYYWLAVHHKESANTWIGLEVEDFKNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLRFKTAELKQEEVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYRTGTEQILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQLLQPHSEDGKTIFSKFIEHLKGLKKEEQNEIPCLSELLEDLNTEHTELNQTQNQGVPNYHGDQKMEGSGPFPPTARIRVIIHEHHPDESTKDGNSKGKLVLLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLREGDHLFFV 628
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 28045203 28052651 - ClG42_05g0188600.10 Clacu05g1886 249633
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1886 628 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1886 628 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1886 628 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1886 628 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1886 628 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1886 628 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu05g1886 628 ProSiteProfiles KHA domain profile. 559 628 IPR021789 -
Clacu05g1886 628 SMART cnmp_10 381 498 IPR000595 -
Clacu05g1886 628 SUPERFAMILY cAMP-binding domain-like 310 495 IPR018490 -
Clacu05g1886 628 Coils Coil 505 535 - -
Clacu05g1886 628 Gene3D Jelly Rolls 349 513 IPR014710 -
Clacu05g1886 628 Pfam KHA, dimerisation domain of potassium ion channel 559 627 IPR021789 -
Clacu05g1886 628 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Clacu05g1886 628 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Clacu05g1886 628 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
Clacu05g1886 628 PANTHER POTASSIUM CHANNEL AKT1 23 533 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Clacu05g1886 628 FunFam Potassium channel KAT2 369 505 - -
Clacu05g1886 628 CDD CAP_ED 381 493 IPR000595 -
Clacu05g1886 628 Gene3D - 63 305 - -
Clacu05g1886 628 Pfam Ion transport protein 61 305 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1886 628 FunFam Potassium channel KAT3 63 305 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1118 Clacu-Chr5:10150267 Clacu05g1886 Clacu-Chr5:28045203 1.50E-130 dispersed
Clacu05g1886 Clacu-Chr5:28045203 Clacu06g1155 Clacu-Chr6:21956845 4.90E-09 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1886 K21867 - csv:101215177 1147.11