Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1904 ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGAAGATTACGATGAAGATTACGATGAGTACGACGATTACGATTATTACGATAACGATTTCGATGCAGAAGAAAAGGTAACAGAAAAAACACCTGAGACTAAGGAAGAAAGAAAGGAGCATAAGCTTTGGCGATGCCCGATTTGCACTTACGACAATGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGAAATACTCCTGATGATGGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAATTTTCAAGAGCAGGACGATAAAATTGTGGAAGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCGGGGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCCTTCAAGTTTGACATTCCTTCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCGAAAGTTGGTTTAAAAGCAGTCAGCCACAACAACTTCAACTCTTCAATATTATCTTCAGACATCACCAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACACAGCTCATCTACTGTATTGCCAACGAGCAAATCAGGCAGTATAGGAGATACACAGTTGAGTACCAAAAGTTCAGACAAATCAGGGATATCAATTGGTAAAAGTACAATGGTTAATGAAGAACACAGTGCATCAATTAGTGTAACAAAAAATTTACAACCACGTGATAACCGGTCGTCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGGCAGCATGGATGAGAGCCCCAACCCTTCTGTCGAGCAGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACGTCAAATGCGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGACACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAGGAAATGCACAAATATGAAAAAGAGGCGAAGTCCCTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTGTGCTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACCTGATATCTGGGGCCACACAAGCTGATGCCGCGGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGATGGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTACTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTGCCCCTTCTGATGTTCAATTTTTGTCCTGGTATCGTGGACCTAATCTTTTGGAGGCGATTGATTCCCTTCAACCACCCACTCGAGAATTCTGTAAGCCACTGCTTATGCCGATATGTGATGTAGTTAGATCACTTTCACTGGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAATCTGGATCTAAGGTTCTTATCATGCCATCTGGAGATAAAGCAACCGTCCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATAGCAAGAGCGGGGGACAATGTGACTGTTTCTCTACAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGCGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAGACATTTGGAATTGAAGATTCTCACCTTGGAATTTGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCACATGAAGGAGGCTGCTAGAGTTTCAAGGATAGTGTCATTACTCGATTCCAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGTGATTGAGGTCGTTTTACAAAGCCCAGTTTGTGTTGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTTTGAGAGCGATGGGTAGAACCATAGCTGTCGGCATTGTAACCCAACTAATTGGAGATCCTGAATAA 2370 42.74 MPRKVSHGLDYDEDYDEDYDEYDDYDYYDNDFDAEEKVTEKTPETKEERKEHKLWRCPICTYDNEDSFSVCDICGVLRNPLVNNRNTPDDGTVENICKDSGVSKMAKSLFASLPNQIPKRAVNFQEQDDKIVEEREENIHKIGNIRGHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAVSHNNFNSSILSSDITKKSANNAALTSKSAHSSSTVLPTSKSGSIGDTQLSTKSSDKSGISIGKSTMVNEEHSASISVTKNLQPRDNRSSSTSTSKSAGKFGSMDESPNPSVEQEKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNAQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDGSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQFLSWYRGPNLLEAIDSLQPPTREFCKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVARHLELKILTLEFATPILIGSQLEIHIHHMKEAARVSRIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28237367 28244272 + ClG42_05g0190400.10 Clacu05g1904 249651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1904 789 FunFam Translation elongation factor EF-1 585 675 - -
Clacu05g1904 789 Pfam GTP-eEF1A C-terminal domain-like 683 782 IPR054696 -
Clacu05g1904 789 FunFam elongation factor 1-alpha isoform X4 679 788 - -
Clacu05g1904 789 SUPERFAMILY Translation proteins 580 675 IPR009000 -
Clacu05g1904 789 MobiDBLite consensus disorder prediction 219 311 - -
Clacu05g1904 789 ProSitePatterns Zinc finger RanBP2-type signature. 55 74 IPR001876 -
Clacu05g1904 789 Pfam Elongation factor Tu domain 2 608 671 IPR004161 GO:0005525(InterPro)
Clacu05g1904 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 597 IPR027417 -
Clacu05g1904 789 Gene3D - 352 582 IPR027417 -
Clacu05g1904 789 Gene3D Translation factors 586 675 - -
Clacu05g1904 789 PANTHER TRANSLATION FACTOR 359 782 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Clacu05g1904 789 PRINTS GTP-binding elongation factor signature 421 429 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu05g1904 789 PRINTS GTP-binding elongation factor signature 457 468 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu05g1904 789 PRINTS GTP-binding elongation factor signature 441 451 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu05g1904 789 PRINTS GTP-binding elongation factor signature 362 375 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu05g1904 789 PRINTS GTP-binding elongation factor signature 502 511 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu05g1904 789 CDD HBS1_C_III 676 784 - -
Clacu05g1904 789 Gene3D Translation factors 679 786 - -
Clacu05g1904 789 Pfam Elongation factor Tu GTP binding domain 361 580 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu05g1904 789 CDD EF1_alpha 362 581 - -
Clacu05g1904 789 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 358 589 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu05g1904 789 SUPERFAMILY Ran binding protein zinc finger-like 51 78 IPR036443 -
Clacu05g1904 789 FunFam Elongation factor 1 alpha-like protein 351 582 - -
Clacu05g1904 789 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 682 785 IPR009001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1904 Clacu-Chr5:28237367 Clacu09g2074 Clacu-Chr9:35537636 3.40E-76 dispersed
Clacu05g1904 Clacu-Chr5:28237367 Clacu02g2154 Clacu-Chr2:34702121 2.60E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1904 K14416 - csv:101219939 1353.96