Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1905 | ATGCCGGGGCTAACCTGTAATGCCTGTAACAAAGAATTTCTAGACGTCGAGGAGCAAAAGCTTCATTACAAGTCCGAATGGCATCGATACAATCTTAAGCGGAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAGAGAGACCTCAATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATCCGAGCTTCGCAAGGAGCACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATCTCCAACAAGGCACCCCAACAAAGTGAGGAGGAAGAAGAGAGCGAGGAGGAGTGGGAAGAAGTCGATCCTGACGAAGACATGGTTGATGGAAATGAGGAGGAGGAGGATGATATTGATGACATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGAAAGCTGCATGGTCCACATGCACAAGCAACATGGATTCTTTATTCCTGACGTTGAATATTTGAAGGATCCAAAAGGCTTCCTTACATACATCGGCCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTCAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAAGGTGCATTATGGTGATGAGGACGAGAATGAAGAAGTAGAATTGGAAGAATTTTATGATTACAGCAGCAGTTACGTTGATGGAAGTGGCAACCAGCTCGTACCGGCAGGGGCTCGAGACAATTCTGTCGAGTTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAGGAACCAGCGAGCAGAAATCGATCAAAACACTTGGTTCCAGGCAATTTCTGCGTTATTATCGCCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATGACTGCTGTATTGGCAGCAAGGTACAGGAGCATGGGATTGGCAACAGTCCAGTCAAGAGAAAAGATGATCAGGATGAAGGTAATGAAAGAAATGAATAGAACTGGGTTGGAAGCTATGCGAACCAAAATCGGATTGAAGAACAACGTAATCCGAAACCTTCCTAAGAATGTTCCATATTAG | 1185 | 44.81 | MPGLTCNACNKEFLDVEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGAHDQEVEKPIIKPLPQRISNKAPQQSEEEEESEEEWEEVDPDEDMVDGNEEEEDDIDDIEVDLDPSCCFMCDLEHDTIESCMVHMHKQHGFFIPDVEYLKDPKGFLTYIGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPAGARDNSVEFGSGGAELILVQGTSEQKSIKTLGSRQFLRYYRQKPRPSPANDAAMTAVLAARYRSMGLATVQSREKMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPY | 394 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28246303 | 28249893 | - | ClG42_05g0190500.10 | Clacu05g1905 | 249652 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1905 | 394 | MobiDBLite | consensus disorder prediction | 127 | 154 | - | - | |
| Clacu05g1905 | 394 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Clacu05g1905 | 394 | SMART | ZnF_U1_5 | 66 | 100 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Clacu05g1905 | 394 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 392 | IPR040025 | GO:0030687(PANTHER)|GO:0042273(PANTHER) | |
| Clacu05g1905 | 394 | MobiDBLite | consensus disorder prediction | 112 | 154 | - | - | |
| Clacu05g1905 | 394 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
| Clacu05g1905 | 394 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
| Clacu05g1905 | 394 | SMART | c2h2final6 | 69 | 93 | IPR013087 | - | |
| Clacu05g1905 | 394 | SMART | c2h2final6 | 217 | 244 | IPR013087 | - | |
| Clacu05g1905 | 394 | SMART | c2h2final6 | 166 | 189 | IPR013087 | - | |
| Clacu05g1905 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 151 | 253 | IPR036236 | - | |
| Clacu05g1905 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
| Clacu05g1905 | 394 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 71 | 93 | IPR013087 | - | |
| Clacu05g1905 | 394 | Pfam | C2H2 type zinc-finger (2 copies) | 168 | 270 | IPR041661 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1905 | K14816 | - | csv:101219700 | 694.501 |