Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1923 ATGAATAGGGATTGTAATACGGGGCTTCTCCTTGGCCTGGGGCGGGTTTCGGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTTGTAGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCGGGTAGTCCGGCGTCGTCGTTTTCAAACTCATCGGGATTTAAAAGAGAGCGAGACAGCGGCGGTGAAGAGAAGGAGGCGGAGGTGTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAACACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGGACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACTGTTTGCCCTTCATGTGAGACCTCAATTTGCAGCGGCGGCGGAGGAGGTGGCGGTGATGCATCTCCGCCCAATACTTTCTCAATTGGATCAAAGCCTCACTTTCTCAAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG 804 46.89 MNRDCNTGLLLGLGRVSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDSGGEEKEAEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCETSICSGGGGGGGDASPPNTFSIGSKPHFLKFPFKHPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28443242 28444692 + ClG42_05g0192300.10 Clacu05g1923 249670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1923 267 SMART HOX_1 113 175 IPR001356 GO:0003677(InterPro)
Clacu05g1923 267 SUPERFAMILY Homeodomain-like 112 179 IPR009057 -
Clacu05g1923 267 Pfam Homeodomain 115 169 IPR001356 GO:0003677(InterPro)
Clacu05g1923 267 Coils Coil 170 207 - -
Clacu05g1923 267 Pfam Homeobox associated leucine zipper 171 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1923 267 FunFam Homeobox-leucine zipper protein 18 100 176 - -
Clacu05g1923 267 MobiDBLite consensus disorder prediction 69 99 - -
Clacu05g1923 267 MobiDBLite consensus disorder prediction 69 87 - -
Clacu05g1923 267 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677(InterPro)
Clacu05g1923 267 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g1923 267 Gene3D - 106 176 - -
Clacu05g1923 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 72 228 IPR050762 -
Clacu05g1923 267 CDD homeodomain 114 172 IPR001356 GO:0003677(InterPro)
Clacu05g1923 267 SMART halz 171 214 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1923 Clacu-Chr5:28443242 Clacu10g0841 Clacu-Chr10:16316330 1.40E-50 dispersed
Clacu05g1923 Clacu-Chr5:28443242 Clacu10g1746 Clacu-Chr10:31003534 3.20E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47727 PF00046 Homeodomain 3.90E-17 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1923 K09338 - csv:101212868 362.844