Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1924 ATGGAGGAATATAATAATGAAGTAAACGAGAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACATGGAACCGACTGTTTTCAACCGCACCACCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCACCAGCTCACCCGCCGCCGACATGTCGTCCTGAACAAAACGGTGTCGTTGATGTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGTTCTTCCATGGTTTCTGGAGATACCACAAAGGATCCAGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATGGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTCCCGGAGATAGATCCTCGTGCTGAAGATAGAGAATTGAAGAATCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTGCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCGTTAGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCATCCTCCCAATGCCGCCCTATATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCATGA 1092 46.15 MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQHGTDCFQPHHPIVKTEATTSHHQLLKFHYPLIRPPPPAHPPPTCRPEQNGVVDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGDTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28447496 28451430 - ClG42_05g0192400.10 Clacu05g1924 249671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1924 363 SUPERFAMILY Homeodomain-like 266 341 IPR009057 -
Clacu05g1924 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 335 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu05g1924 363 Gene3D - 270 332 - -
Clacu05g1924 363 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g1924 363 CDD homeodomain 277 329 IPR001356 GO:0003677(InterPro)
Clacu05g1924 363 Pfam ELK domain 245 266 IPR005539 GO:0003677(InterPro)
Clacu05g1924 363 FunFam Homeobox protein knotted-1-like 2 270 332 - -
Clacu05g1924 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677(InterPro)
Clacu05g1924 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g1924 363 MobiDBLite consensus disorder prediction 1 20 - -
Clacu05g1924 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu05g1924 363 SMART ELK_2 161 181 IPR005539 GO:0003677(InterPro)
Clacu05g1924 363 SMART ELK_2 245 266 IPR005539 GO:0003677(InterPro)
Clacu05g1924 363 SMART HOX_1 267 332 IPR001356 GO:0003677(InterPro)
Clacu05g1924 363 Pfam KNOX1 domain 102 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu05g1924 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g1924 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677(InterPro)
Clacu05g1924 363 MobiDBLite consensus disorder prediction 212 241 - -
Clacu05g1924 363 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2242 Clacu-Chr1:33593647 Clacu05g1924 Clacu-Chr5:28447496 1.00E-77 dispersed
Clacu02g0227 Clacu-Chr2:2135320 Clacu05g1924 Clacu-Chr5:28447496 1.70E-72 dispersed
Clacu05g1807 Clacu-Chr5:27318396 Clacu05g1924 Clacu-Chr5:28447496 4.60E-29 dispersed
Clacu05g1924 Clacu-Chr5:28447496 Clacu05g2747 Clacu-Chr5:34935468 1.20E-71 dispersed
Clacu05g1924 Clacu-Chr5:28447496 Clacu08g1841 Clacu-Chr8:27695882 8.00E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47728 PF03791 KNOX2 3.20E-25 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1924 - - - 0.0