Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g1927 | ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATCTGACCGGAATTTCCTCGCCAGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCATTACCTTCCCTCTGCGGCGGATTCCGACGATTTGGACGCGGTGGCGGAAGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGCATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGAGATTCTTGCGATCTCGCGCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACAGGACTCAACCATGTAAGGATGGATTAGCCTGTCGCCGTCGTGTCTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAAATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTCAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTGTCGGAGCTATTAATGTGA | 1050 | 51.24 | MMIGEQSRFNHTIQVPPWDPLEDHHLTGISSPVFIAGGVDSFIDSFSAIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKHHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28503474 | 28504523 | + | ClG42_05g0192700.10 | Clacu05g1927 | 249674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g1927 | 349 | FunFam | Zinc finger CCCH domain-containing protein 66 | 74 | 142 | - | - | |
Clacu05g1927 | 349 | Gene3D | - | 111 | 185 | - | - | |
Clacu05g1927 | 349 | PANTHER | UNKEMPT FAMILY MEMBER | 42 | 348 | IPR045234 | - | |
Clacu05g1927 | 349 | ProSiteProfiles | Zinc finger C3H1-type profile. | 117 | 143 | IPR000571 | GO:0046872(InterPro) | |
Clacu05g1927 | 349 | SMART | c3hfinal6 | 116 | 142 | IPR000571 | GO:0046872(InterPro) | |
Clacu05g1927 | 349 | SMART | c3hfinal6 | 151 | 174 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g1927 | Clacu-Chr5:28503474 | Clacu11g0335 | Clacu-Chr11:3007710 | 4.70E-86 | dispersed | |
Clacu07g0241 | Clacu-Chr7:2814102 | Clacu05g1927 | Clacu-Chr5:28503474 | 1.00E-57 | transposed | |
Clacu03g1629 | Clacu-Chr3:29942078 | Clacu05g1927 | Clacu-Chr5:28503474 | 9.70E-93 | wgd | |
Clacu05g1927 | Clacu-Chr5:28503474 | Clacu08g1842 | Clacu-Chr8:27719004 | 1.00E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47729 | None | None | None | None | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g1927 | - | - | - | 0.0 |