Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1927 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATCTGACCGGAATTTCCTCGCCAGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCATTACCTTCCCTCTGCGGCGGATTCCGACGATTTGGACGCGGTGGCGGAAGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGCATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGAGATTCTTGCGATCTCGCGCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACAGGACTCAACCATGTAAGGATGGATTAGCCTGTCGCCGTCGTGTCTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAAATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTCAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTGTCGGAGCTATTAATGTGA 1050 51.24 MMIGEQSRFNHTIQVPPWDPLEDHHLTGISSPVFIAGGVDSFIDSFSAIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKHHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM 349
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 28503474 28504523 + ClG42_05g0192700.10 Clacu05g1927 249674
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1927 349 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
Clacu05g1927 349 Gene3D - 111 185 - -
Clacu05g1927 349 PANTHER UNKEMPT FAMILY MEMBER 42 348 IPR045234 -
Clacu05g1927 349 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872(InterPro)
Clacu05g1927 349 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
Clacu05g1927 349 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1927 Clacu-Chr5:28503474 Clacu11g0335 Clacu-Chr11:3007710 4.70E-86 dispersed
Clacu07g0241 Clacu-Chr7:2814102 Clacu05g1927 Clacu-Chr5:28503474 1.00E-57 transposed
Clacu03g1629 Clacu-Chr3:29942078 Clacu05g1927 Clacu-Chr5:28503474 9.70E-93 wgd
Clacu05g1927 Clacu-Chr5:28503474 Clacu08g1842 Clacu-Chr8:27719004 1.00E-77 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47729 None None None None Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1927 - - - 0.0