Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1930 ATGTCCATGCCTTCTTTAACTTTATCAAAATCTTTTCAGTCTTCAGAGATTCCAACATTTCAGCCATTTTCCGGTTTCCTCGGCTCCCTCTTCCCTCCTGCTGATGAAAATCAGGATTTCTGGTGGGTTTTTCAAGGGGTGATTTCGATTCTAGTCGAGATGCAATCGAAGGTTCTCCCACTGGAGGAAGGGAAAGACCCTGGACCTATGAACAGGACCAACCAAGCTAGGCCGTTGCCCTTTAGGTTACTTCAGTTATTCCTGTTGTTTTTGGTTCTTTGTGTTGCATTTTCGTTTGTTAGTTTGTATACGATCCGTCATTTTGGGATTGATAGCGCAGTGACGATGGCTAAGTCTAATATCCTTCCCTGTTTGGAGGAATCCAATATTAGTTTGGGTCAATGGATTGAGGCTCCGGTGGATTTGATGCACTCAATGACCGACGAGGAGTTGTTTTGGAGAGCTTCGTTTTCACCTCACATTAAGAATTACCCTTTTAAAAGGGTTCCCAAAATTGCTTTTATGTTCTTGACGAAAGGTCCATTGCCGCTTGCCCCACTTTGGGAGAGATTTCTGAACGGACATCAAACCCTCTTTTCAATTTACATTCACTCTCTGCCATCGTTCAAACCCAATTTTACTCATGCTTCTGTGTTTCATGGGAGACAAATTCCTAGCCAGGTTGCAGAATGGGGAAGAATGAGTATATGTGATGCCGAGAAAAGACTCCTAGCCAATGCACTGCTTGACATCAACAACGAATGGTTCATTCTCCTCTCGGAATCATGCATTCCTCTCTACAATTTCAGTGTGATATACAACTACTTGAAGGGATCCAAATATAGCTTTGTGGGTTCATTCAATGACCTTGGCCCTTACGGGAGAGGACGATATAGGGACGCAATGGCACCAGAGGTAAACATCACAGAATGGCGAAAAGGCTCCCAATGGTTCGAAGTGAACCGTAAGCTTGCAATCAACATAGTTCAAGACACCAAATATTATCAGAAATTCGAACAATTCTGCCGACCGCCATGCTATGTTGACGAGCATTATTTCCCAACAATGCTCACAATAGAAGCAGGAGGCGTTATAGCCAACAGAAGCCTCACGTGGGTGGATTGGTCAAGAGGAGGCCCTCACCCCGCAACATTCGGAGGACGGGACATTACAGAAGAATTGTTAACAAGAATTGTAGATGGTCAGAACTGCAGTTACAATGGCGGCACCTCCTCCATTTGCTCTCTGTTTGCAAGAAAATTCGCACCGAGTTCGTTGCAGCCTTTGTTACGTCAAGCATTGGACATGTTTGGATATTAA 1320 44.24 MSMPSLTLSKSFQSSEIPTFQPFSGFLGSLFPPADENQDFWWVFQGVISILVEMQSKVLPLEEGKDPGPMNRTNQARPLPFRLLQLFLLFLVLCVAFSFVSLYTIRHFGIDSAVTMAKSNILPCLEESNISLGQWIEAPVDLMHSMTDEELFWRASFSPHIKNYPFKRVPKIAFMFLTKGPLPLAPLWERFLNGHQTLFSIYIHSLPSFKPNFTHASVFHGRQIPSQVAEWGRMSICDAEKRLLANALLDINNEWFILLSESCIPLYNFSVIYNYLKGSKYSFVGSFNDLGPYGRGRYRDAMAPEVNITEWRKGSQWFEVNRKLAINIVQDTKYYQKFEQFCRPPCYVDEHYFPTMLTIEAGGVIANRSLTWVDWSRGGPHPATFGGRDITEELLTRIVDGQNCSYNGGTSSICSLFARKFAPSSLQPLLRQALDMFGY 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28534631 28536840 + ClG42_05g0193000.10 Clacu05g1930 249677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1930 439 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 87 432 IPR044174 GO:0016757(InterPro)
Clacu05g1930 439 Pfam Core-2/I-Branching enzyme 172 398 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1930 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1930 Clacu-Chr5:28534631 Clacu07g1352 Clacu-Chr7:28350031 5.40E-140 dispersed
Clacu05g1370 Clacu-Chr5:14928294 Clacu05g1930 Clacu-Chr5:28534631 4.10E-100 transposed
Clacu10g0713 Clacu-Chr10:10055077 Clacu05g1930 Clacu-Chr5:28534631 8.50E-104 transposed
Clacu05g1930 Clacu-Chr5:28534631 Clacu09g0046 Clacu-Chr9:517551 1.80E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g51 . Blo12g01006 . Bda03g00151 . Bpe02g00478 . Bma01g02224 . . Cma01g01750 . Car09g00275 . . . Cpe06g00231 . . . . . . . Cla05g01814 Cam05g1938 Cec05g1951 Cco05g2012 Clacu05g1930 Cmu05g1812 Cre05g1938 Cone4ag1647 . . . Lsi04g01440 . . . . . Bda01g00970 . . Bpe04g00134 . . Sed11g1846 Cmo01g01759 Cmo09g00325 Cma09g00327 . Car01g01361 . . Cpe02g00248 Bhi09g03176 Tan01g4649 Cmetu07g0345 . Hepe01g1863 Mch11g0398 . . . . . . . . . . . Cme07g00243
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007702 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36