Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1933 ATGGGAATCTGTATATCCTCTGCATCTTCTCAGATTCGCCATGAAACTAACAAAGTTGGGAGTGTTTTAGAAGAAGATTATTGTAAAAAGTCTTATTGTGTGTGTGGGATTCAGAAACTGGAATCCATTTGTTCCAAGCAAGGGAGGAAAGGAGTCAACCAAGATGCTGCCTTTTCCTATCAAGAGTATGGAGAAGCAGCGGAGAGTTGTTTGTTTGGAGTTTTTGATGGGCATGGACAAAATGGTCATTTTGTGAGCAATATAGTGAAGAATAGATTACCTTCACTGTTGCTTGGGCAGATAACTGGGGAGACAAAGAGTTTTGAATTGTGGAAACAAGCTTTTGAAACTTCCTTCAAGGCCATGGATAAGGAAATCAAAGTTGAAGAAAATTTGGATTGCTCCTATAGCGGATCCACCGCAGTTGTGGTGGTCAAGCAGGGAGATTATTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGGATCACAGATGATGGAGGAATCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGATTACCGAGTGAGGGTGAGCGAATAAGGAGGTGCAAAGGGAGGGTGCTGGCGCTGAAAGAAGAGGCGCATATACCCAGAGTGTGGCTGCCCAATGAAGACGCCCCGGGGCTGGCTATGTCCAGAGCTTTTGGAGATTTTGCTCTTAAACATTATGGCATTATTGCTCTCCCCCTTCTCTCCTTCCGCCCTCTTACTTCTCACGATCGTTTTATTATTCTCGCCACTGATGGGATATGGGACGTGCTGAGCAACAATGAAGTAGCGTCCATCGTGTGGGCTGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCCGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCGTTTGCCATTTTTTACAAAGCCAAAACTGA 957 46.81 MGICISSASSQIRHETNKVGSVLEEDYCKKSYCVCGIQKLESICSKQGRKGVNQDAAFSYQEYGEAAESCLFGVFDGHGQNGHFVSNIVKNRLPSLLLGQITGETKSFELWKQAFETSFKAMDKEIKVEENLDCSYSGSTAVVVVKQGDYLVIGNLGDSRAVMGRITDDGGIKAIQLTTDLKPGLPSEGERIRRCKGRVLALKEEAHIPRVWLPNEDAPGLAMSRAFGDFALKHYGIIALPLLSFRPLTSHDRFIILATDGIWDVLSNNEVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVVCHFLQSQN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28556357 28558196 - ClG42_05g0193300.10 Clacu05g1933 249680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1933 318 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169(InterPro)
Clacu05g1933 318 PANTHER PROTEIN PHOSPHATASE 42 311 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu05g1933 318 Gene3D - 39 316 IPR036457 -
Clacu05g1933 318 ProSiteProfiles PPM-type phosphatase domain profile. 40 314 IPR001932 -
Clacu05g1933 318 Pfam Protein phosphatase 2C 44 293 IPR001932 -
Clacu05g1933 318 CDD PP2Cc 42 311 IPR001932 -
Clacu05g1933 318 SMART PP2C_4 24 312 IPR001932 -
Clacu05g1933 318 SUPERFAMILY PP2C-like 41 315 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1933 Clacu-Chr5:28556357 Clacu10g0354 Clacu-Chr10:4496676 3.40E-75 dispersed
Clacu05g1933 Clacu-Chr5:28556357 Clacu02g1780 Clacu-Chr2:31315503 6.90E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1933 - - - 0.0