Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1936 ATGGCCGCCGTGAGCCGAGCTTCCACTCGCATCCCTCATCTGCTTGCTGCACGGGGAGCTTTTTCTCTTCACACCACAGCTCCGGCTTTGTCTTCTTCATCGACTGCCTCTCCGACGCCGTATGCCAGGCCGCTGCCTCCTTTGGCCTCATCCCCGACGGGGCTTCCGAAGGCGGCTGAGTATGTGATCTCGAAGGTTGACGACCTCATGAACTGGGCTCGCCGTGGCTCTATCTGGCCCATGACCTTCGGCCTTGCTTGTTGCGCCGTTGAAATGATGCACACCGGTGCTGCTCGCTATGACCTCGATCGCTTCGGTGTCATCTTCCGTCCCAGCCCTAGGCAATCTGATTGTATGATTGTCGCCGGTACCCTCACCAACAAGATGGCCCCAGCGCTTCGCAAGGTTTATGATCAAATGCCAGAACCTCGGTGGGTTATATCCATGGGAAGCTGCGCAAATGGTGGCGGATACTATCACTACTCGTACTCAGTCGTTCGGGGCTGTGATCGGATTGTCCCTGTCGATATCTACGTTCCTGGTTGCCCTCCTACTGCTGAGGCACTACTTTATGGAATTCTTCAGTTGCAAAAGAAGATCAATAGACGCAAAGATTTCCTACAGTGGTGGACCAAGTGA 639 54.93 MAAVSRASTRIPHLLAARGAFSLHTTAPALSSSSTASPTPYARPLPPLASSPTGLPKAAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDFLQWWTK 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28575156 28578537 + ClG42_05g0193600.10 Clacu05g1936 249683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1936 212 Gene3D - 58 212 - -
Clacu05g1936 212 FunFam NADH-quinone oxidoreductase subunit B 2 54 212 - -
Clacu05g1936 212 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 53 201 IPR006138 GO:0008137(InterPro)|GO:0048038(InterPro)|GO:0051539(InterPro)
Clacu05g1936 212 NCBIfam NADH-quinone oxidoreductase subunit B 62 202 IPR006138 GO:0008137(InterPro)|GO:0048038(InterPro)|GO:0051539(InterPro)
Clacu05g1936 212 SUPERFAMILY HydA/Nqo6-like 60 204 - -
Clacu05g1936 212 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 168 184 IPR006138 GO:0008137(InterPro)|GO:0048038(InterPro)|GO:0051539(InterPro)
Clacu05g1936 212 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 87 196 IPR006137 GO:0051536(InterPro)
Clacu05g1936 212 PANTHER NADH DEHYDROGENASE 56 210 - GO:0005747(PANTHER)|GO:0008137(PANTHER)|GO:0009060(PANTHER)|GO:0015990(PANTHER)|GO:0032981(PANTHER)|GO:0045272(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1936 K03940 - - csv:101207001 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0546 Clacu-Chr3:5671952 Clacu05g1936 Clacu-Chr5:28575156 2.60E-19 dispersed
Clacu05g1936 Clacu-Chr5:28575156 Clacu10g0613 Clacu-Chr10:8300398 9.70E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g63 . Blo12g01010 Bda01g00612 . . Bpe02g00481 Bma04g00130 Bma01g02220 . . Cma01g01743 . Car09g00278 . . . Cpe06g00234 . . . . . . . Cla05g01822 Cam05g1944 Cec05g1957 Cco05g2017 Clacu05g1936 Cmu05g1817 Cre05g1943 . . . . Lsi04g01435 . . . . . . . . Bpe04g00131 . . Sed11g1842 Cmo01g01768 Cmo09g00329 Cma09g00329 . Car01g01355 . . Cpe02g00254 Bhi09g03169 Tan01g4642 Cmetu07g0953 . Hepe01g1871 Mch11g0405 . . . . . . . . . . . Cme07g00234
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006023 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 3 1 1 39