Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1942 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGCGGAATTAATGAACACCAGCGATTGAGCGATGCCCGACCTGTTACACGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCGTCGTCTTCTGGGTCTTCCTCGTCTTTGTCTATGGCGTCTTCCACTACAATGGGGAGATTGGAGGCTGTTGAATCCGTCGTTGATCCGGCGGCTCCTGGGGATGTCGTGGGCGGTGGGTGCGTGGATTTCAATGCCTTGGAAGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGTGCTTCCGATCCTGATTCCAGACAAGACACTGAATCCGCTCAGATCGATGCTGCTAAGCGGATGAGTCTTGGCTGTTCGCCTACAGTCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCCCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCAAACTCTAGCACTCGAGGAAAGATGCCACTGTTAGTTGATCTTAAAGAAATATGTGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAATATGGCTTCATTTTAAGTGGTCTGGTTCAAAAAATTGCTGATATCGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCGCAGGAGTTATGAGATGCGTAGTTCCCTGAACACTATTATTCTACCACTTGGACGTCTAGATATTGGACTTGCACGTCATAGAGCCTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACAGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCGAATTATGGCTTTGATAGGAGGCCCGCAGATGTTATAGAAGTTCCTGAAGATACACCAGTATTACAAAATGAAGAAGCTGAATCAGTATCAATTTCATCTACTCAAGATGGAGTAGCAAATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAACGTTAGGAACTTTATTGAAGAAATTCAAACTGGGAGTCCTGATTATGATTTTACGAAGCTTCAAGAATCAGAAAACAGTGTGTATGATAGTTCATTGGGTGCATGTGCACAGTCCGCATCTGCACAGAAGAAGAAAGTGAAAAAAGTGTCAAAGTATGTCATAAGTGCTGCAAAAAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCACAGGATAATGGTGAAAGCAAAGCGACTTTTCAAATGTATCCAATCAACGGAAAGGGCATTGATGTTGGTCTCCATAGCCACCCCTATAGTTTAGCAAACCATGGACAGTCTTCTGCTACTTCTACCGAAACAGAGTATTTAAACAATGCTGTCCGTGAAAATAAGCAGAAAGTGTCTGCCGAGGGATCATCTGAAGAACAAATGCCTGATATAAATGCAAACAAGCACAGTATTTTTTGGCCTCACAGTATGAAAAACGAGGGCTTTGTGTTTGTTGATGCTAATGGGGAAACCGGAAAATTGGTCGATGTTAATGGAACTTTTCATCGTGAACATGTGGATGGTGTTTCATTGACATCTGATGCCGACTCTCATAAAAGACTAGGAACTGCCTTAGTGAGTGAAGAAAGAAGATTGTTACAAGATACTAGTGGTGGAAATCTTCAGTGCTTTGATTTGCGTGAAAATCCGCATGAAAATTTGTTAGAAATTGATAATAGTAAACTGCATGCAAGTGATGACCACAGTGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTCCACATTGGTGAACGTATTGGTATTGGGTCATATGGTGAGGTTTATCGAGCAGACTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGATCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGGCTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACCGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAACTCTCAACTAGATGAAAGGAGACGCTTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATAGTTCATAGAGATCTGAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAATACATTTCTGTCTTCGAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAACGAACCGGCCAATGAAAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGTTAACGACTTGCCGGATACCATGGAAAGGTTTGAATCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGGACTCGCAATTGAGGCCGTCATTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAACGGCTTGTTCGGAAAACATGCTCTGTGAATCAAATATCGGAGTGA 2913 42.71 MSKMKHLLRKLHIGGGINEHQRLSDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMASSTTMGRLEAVESVVDPAAPGDVVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPTVSGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTRRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADVIEVPEDTPVLQNEEAESVSISSTQDGVANVCNLISKEASDLDAQSKENVRNFIEEIQTGSPDYDFTKLQESENSVYDSSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNGESKATFQMYPINGKGIDVGLHSHPYSLANHGQSSATSTETEYLNNAVRENKQKVSAEGSSEEQMPDINANKHSIFWPHSMKNEGFVFVDANGETGKLVDVNGTFHREHVDGVSLTSDADSHKRLGTALVSEERRLLQDTSGGNLQCFDLRENPHENLLEIDNSKLHASDDHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDSQLRPSFSQLITRLRRLQRLVRKTCSVNQISE 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28609555 28618216 - ClG42_05g0194200.10 Clacu05g1942 249689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1942 970 SMART serkin_6 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 SUPERFAMILY Protein kinase-like (PK-like) 677 950 IPR011009 -
Clacu05g1942 970 MobiDBLite consensus disorder prediction 13 64 - -
Clacu05g1942 970 CDD STKc_MAP3K-like 706 949 - -
Clacu05g1942 970 Pfam Ethylene-responsive protein kinase Le-CTR1 144 348 - -
Clacu05g1942 970 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Clacu05g1942 970 FunFam Serine/threonine-protein kinase isoform 1 691 778 - -
Clacu05g1942 970 Gene3D Transferase(Phosphotransferase) domain 1 779 965 - -
Clacu05g1942 970 PRINTS Tyrosine kinase catalytic domain signature 813 831 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 PRINTS Tyrosine kinase catalytic domain signature 774 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 PRINTS Tyrosine kinase catalytic domain signature 860 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524(InterPro)
Clacu05g1942 970 FunFam Serine/threonine-protein kinase CTR1 779 962 - -
Clacu05g1942 970 PANTHER SERINE-THREONINE PROTEIN KINASE 38 955 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu05g1942 970 Pfam Protein tyrosine and serine/threonine kinase 700 952 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 MobiDBLite consensus disorder prediction 44 64 - -
Clacu05g1942 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1942 970 ProSiteProfiles Protein kinase domain profile. 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1823 Clacu-Chr2:31722375 Clacu05g1942 Clacu-Chr5:28609555 5.50E-73 dispersed
Clacu03g1669 Clacu-Chr3:30410033 Clacu05g1942 Clacu-Chr5:28609555 1.80E-191 dispersed
Clacu04g1122 Clacu-Chr4:25482086 Clacu05g1942 Clacu-Chr5:28609555 2.00E-190 dispersed
Clacu05g1942 Clacu-Chr5:28609555 Clacu11g1648 Clacu-Chr11:27621285 2.30E-114 dispersed
Clacu10g0440 Clacu-Chr10:5489405 Clacu05g1942 Clacu-Chr5:28609555 1.10E-22 dispersed
Clacu05g1942 Clacu-Chr5:28609555 Clacu04g1031 Clacu-Chr4:24581566 1.90E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73587 PF07714 PK_Tyr_Ser-Thr 3.80E-65 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1942 K04424 - csv:101214554 1714.12