Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1952 ATGATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTGCCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCCAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTATTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCCTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATAAATGATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA 1236 43.45 MMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPGPGQLFASCPAWEINDNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTCWRS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28679428 28681280 - ClG42_05g0195200.10 Clacu05g1952 249699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1952 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Clacu05g1952 411 MobiDBLite consensus disorder prediction 388 411 - -
Clacu05g1952 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 48 371 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu05g1952 411 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 169 193 - -
Clacu05g1952 411 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Clacu05g1952 411 Gene3D Classic Zinc Finger 163 232 - -
Clacu05g1952 411 MobiDBLite consensus disorder prediction 47 69 - -
Clacu05g1952 411 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 131 165 - -
Clacu05g1952 411 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Clacu05g1952 411 FunFam protein indeterminate-domain 12-like 73 141 - -
Clacu05g1952 411 Gene3D Classic Zinc Finger 90 117 - -
Clacu05g1952 411 SMART c2h2final6 170 190 IPR013087 -
Clacu05g1952 411 SMART c2h2final6 94 116 IPR013087 -
Clacu05g1952 411 MobiDBLite consensus disorder prediction 29 46 - -
Clacu05g1952 411 MobiDBLite consensus disorder prediction 29 78 - -
Clacu05g1952 411 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 196 235 - -
Clacu05g1952 411 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1952 Clacu-Chr5:28679428 Clacu09g0733 Clacu-Chr9:6411890 1.00E-84 dispersed
Clacu05g1952 Clacu-Chr5:28679428 Clacu09g0073 Clacu-Chr9:709407 2.70E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47731 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1952 K25870 - csv:101215280 620.157