Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1958 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACGCTCTTAAGAATTATGAGTTTGACAAGAACAATTCGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.01 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNSGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28721197 28723005 - ClG42_05g0195800.10 Clacu05g1958 249705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1958 445 MobiDBLite consensus disorder prediction 307 326 - -
Clacu05g1958 445 MobiDBLite consensus disorder prediction 12 30 - -
Clacu05g1958 445 ProSiteProfiles IQ motif profile. 90 118 - -
Clacu05g1958 445 MobiDBLite consensus disorder prediction 1 31 - -
Clacu05g1958 445 FunFam IQ-domain 11 89 140 - -
Clacu05g1958 445 ProSiteProfiles IQ motif profile. 114 141 - -
Clacu05g1958 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Clacu05g1958 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Clacu05g1958 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Clacu05g1958 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Clacu05g1958 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Clacu05g1958 445 MobiDBLite consensus disorder prediction 410 424 - -
Clacu05g1958 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1958 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1958 Clacu-Chr5:28721197 Clacu09g2069 Clacu-Chr9:35494288 7.40E-28 dispersed
Clacu03g1192 Clacu-Chr3:23178893 Clacu05g1958 Clacu-Chr5:28721197 2.70E-39 transposed
Clacu05g1958 Clacu-Chr5:28721197 Clacu09g0077 Clacu-Chr9:742456 6.70E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g2069 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Clacu05g2280 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Clacu03g1192 . 36 443 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Clacu05g1958 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Clacu01g2430 . 25 298 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Clacu07g0989 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Clacu01g2430 . 25 246 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Clacu07g0989 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Clacu01g0760 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Clacu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.4e-115 411.4
Clacu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.4e-110 396.4
Clacu09g0028 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Clacu03g1648 . 1 391 IQD Protein Family AT3G16490 50.2 5.1e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39