Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1967 ATGCATGCATTAGTTGATGACGGGTGGAAAGTGGAGAAGAGAGTTGCACAGTTGAGTTGCATGTGCTGCGACGCAGGAGAGACAACCCGGTCTAAGCGGCTTAAGAAAGAAAGTCCGAGTGGGATTGAATGTGTATCCACGCTCGAAGCAGCAGATAAGAAAAAGGGGCTAAGCCGGAGAACTTTTGAGAATGGGTTTTATGCTCTCACTGAGGTTTCTCTTCAAGTTCTTCTACCTGTTGCTATAGATTACAGCTTCCGATTGAGGAGCTTCGTCGGAGTCGGCGGCGTTGATTCGGATCGGGAGGAGGAAGAGAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAAAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAAAAGAAATCTGGTGATATATATGCAATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGGGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTAGCTAAATTTTACATTGCACAGAGTGTTCTAGCAATAGAATCTATCCACAGGCACAGCTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCATTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATCTGGCAGAACCAATGGATATAGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACTGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTTGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTAACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCCCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATGGACGTATTAAATGGCACCGGGGGAGACTACACAACCGAACTAATAGGCAATGAGGCTGAAATGCAGATGTTACAGTTTACAATACAAAATGGATATATAAAGCAAACAACAATACCTGAAGAGTTTCTAATCATGAGAGACCAGCTAAGTAATCAAGCACTTGGTGAAAAAGTTCTCTTTGGTCAAAGTTCTTTTTTCTCCATTTCCCCTTCTTCATTAATGGCTAATTATCAAGGAACTGGATAG 1989 41.83 MHALVDDGWKVEKRVAQLSCMCCDAGETTRSKRLKKESPSGIECVSTLEAADKKKGLSRRTFENGFYALTEVSLQVLLPVAIDYSFRLRSFVGVGGVDSDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHSYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHGSLDSQRLSMKQPPMDVLNGTGGDYTTELIGNEAEMQMLQFTIQNGYIKQTTIPEEFLIMRDQLSNQALGEKVLFGQSSFFSISPSSLMANYQGTG 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28808871 28817354 + ClG42_05g0196700.10 Clacu05g1967 249714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1967 662 Pfam Protein kinase C terminal domain 510 555 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 FunFam Non-specific serine/threonine protein kinase 510 520 - -
Clacu05g1967 662 SMART serkin_6 190 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 PANTHER SERINE/THREONINE-PROTEIN KINASE 102 559 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu05g1967 662 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524(InterPro)
Clacu05g1967 662 Pfam Protein kinase domain 191 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 Pfam Protein kinase domain 382 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 SMART pkinase_C_6 492 557 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 Gene3D Phosphorylase Kinase; domain 1 153 273 - -
Clacu05g1967 662 FunFam Non-specific serine/threonine protein kinase 151 273 - -
Clacu05g1967 662 CDD STKc_NDR_like 188 556 - -
Clacu05g1967 662 Gene3D Transferase(Phosphotransferase) domain 1 390 511 - -
Clacu05g1967 662 Gene3D Transferase(Phosphotransferase) domain 1 274 340 - -
Clacu05g1967 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 CDD MobB_NDR_LATS-like 124 185 - -
Clacu05g1967 662 ProSiteProfiles AGC-kinase C-terminal domain profile. 492 565 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 ProSiteProfiles Protein kinase domain profile. 190 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1967 662 FunFam Non-specific serine/threonine protein kinase 274 341 - -
Clacu05g1967 662 FunFam Non-specific serine/threonine protein kinase 390 509 - -
Clacu05g1967 662 SUPERFAMILY Protein kinase-like (PK-like) 187 537 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1967 Clacu-Chr5:28808871 Clacu06g0711 Clacu-Chr6:8302975 1.20E-183 dispersed
Clacu01g2622 Clacu-Chr1:36375331 Clacu05g1967 Clacu-Chr5:28808871 5.60E-182 transposed
Clacu04g1346 Clacu-Chr4:27372354 Clacu05g1967 Clacu-Chr5:28808871 1.40E-69 transposed
Clacu08g1755 Clacu-Chr8:26969934 Clacu05g1967 Clacu-Chr5:28808871 1.60E-167 transposed
Clacu03g1579 Clacu-Chr3:29358800 Clacu05g1967 Clacu-Chr5:28808871 1.40E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73588 PF00069 Pkinase 1.10E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1967 K08790 - csv:101212228 1012.68