Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1976 ATGAGCCTGGATGCAGCAGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACTGCTCTTTATCCTGTTGTTCTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTATCATGCTTTAAAATGTCATACTCTATCATGCGTCATGAAGGCTTGAGAGGGTTTTACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACGATTAAGCTAGGCTTTTCAGACACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCACAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGCGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCTGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTTGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGCTATGGCTTTAAATCAGATTCTAAGGCAACGGTGGCAGTTCAGGGGTTGAGTGCAGCCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCTCTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCAAAGACGCCCTCTAACAGCATTGCAGACCATAAGGAACTTGATTAAGGAAGGTGGACTGAATGCTTGTTACAGAGGGCTTGGTCCAAGGTGGGCTTCAATGGCCATGTCGGCGACCACCATGATCACAACCTATGAGTTTCTCAAACGACTGTCTACTAAGAACCAAGATTGTTTGAGCAGATGA 1053 42.83 MSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPVVLLKTRLQVSATKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKSDSKATVAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLIKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKNQDCLSR 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28864369 28865421 + ClG42_05g0197600.10 Clacu05g1976 249723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1976 350 Gene3D Mitochondrial carrier domain 29 348 IPR023395 -
Clacu05g1976 350 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
Clacu05g1976 350 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085(InterPro)
Clacu05g1976 350 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
Clacu05g1976 350 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Clacu05g1976 350 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Clacu05g1976 350 Pfam Mitochondrial carrier protein 250 343 IPR018108 -
Clacu05g1976 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 340 IPR018108 -
Clacu05g1976 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
Clacu05g1976 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Clacu05g1976 350 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 6 346 - -
Clacu05g1976 350 SUPERFAMILY Mitochondrial carrier 23 337 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0786 Clacu-Chr5:6756815 Clacu05g1976 Clacu-Chr5:28864369 3.10E-63 dispersed
Clacu05g1976 Clacu-Chr5:28864369 Clacu08g1261 Clacu-Chr8:22610186 2.20E-14 dispersed
Clacu05g1976 Clacu-Chr5:28864369 Clacu08g1866 Clacu-Chr8:27936946 1.80E-13 wgd
Clacu05g1976 Clacu-Chr5:28864369 Clacu09g0088 Clacu-Chr9:846194 1.80E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1976 K15121 - csv:101213436 644.81