Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1979 ATGAGGAAAAAGTCCCTTGATTCTGTTGTCTGCCATTTGTCTTTCTTCTTTATACTTCTTTTCTATGCCAGTTTCTGCTTCGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGGGGAGGTCGGGGCTTGGTGATTGGGTGCCGTCGTCGTCCCCGTCTGCTCATTGCCATTTCTCTGGCGTTACGTGCGATGGTGATAGTAGAGTTGTTGCGCTTAACGTCTCGAATCTCCGTCTATTTGGTCCAATTCCGCCGGAAATTGGGATGTTCGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACCGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAATTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCGGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATATAACAATAATTTCTCTTGTCCACTACCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGCGGATCCTACTTTAATGGTCAGATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTGCGGGGAAATACGCTTTCCGGAAGGATTCCGGCGAGTTTGGCGCGGTTAAAGAATCTTAAATACCTTTACGCCGGATATTTTAATCATTACGATGGCGGAATTCCGGCCGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAACTGTAACCTCACCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACGCTGATCAATTTGTTCAGCAACAAACTTCATGGTCCAATTCCTAGTTTCGTCGGTGATTTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAACTCCCTGAGAATCTCGGGCGTAACGGAAAGTTGTTTCTGCTCGACGTGGCGACAAATCATTTAACTGGGCTTATTCCTCCGGATTTATGTAACGGTAGGTTGAAGATTTTGATTCTGTTGGATAATTACTTTTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTACTAATTACTTTTCCGGCGCCCTTCCATCGCAAATGTCAGGGGAGTTTCTTGGAACTCTGCAGCTGAATAACAACAATATAACCGGGGAAATCCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAGCAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAGATCCCGCATTCGGTCGTTCATTGCACCTCTCTAACGTCAATTGATCTCAGTAAAAATGATCTTGTCGGCACAATTCCAAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCTTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTAACAACTCTGGATTTGTCATACAACAATTTTTTCGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCTTTCGTCGGAAACCCTAACCTCTGCTTCCCCCATGGGCCTTGCGCATCAATGCACAGGAATTTGAGATCTGTTAAACTAATCATCCCAATCGTTGCGATATTCATCGCTCTATTATGCGCACTCGCTGCATTTTATCTACGGAAGAGAAAGAGGATTCAGAAGTCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTGAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAGGAGGATAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTACCGTGGATCAATGCCAGACGGCTCCGTCGTGGCGATTAAACTATTGTTAGGAAGCGGCCGGAATGACCACGGTTTCTCGGCCGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGGGATACGAATCTGCTGCTGTACGAATACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTACGGTACAAGATCGCAATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATCCTACTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTTAAAGTGGACGAGAAAAGCGACGTGTACAGTTTCGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTCAGGTGGGTCCTCAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCCTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGTGTAATCCATCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTCCACATGCTCTCCAATCCTCCCAGGTCTGCCCCTACTCTCATCAACCTCTAA 2913 47.51 MRKKSLDSVVCHLSFFFILLFYASFCFANRDMEALLKMKSALIGPGRSGLGDWVPSSSPSAHCHFSGVTCDGDSRVVALNVSNLRLFGPIPPEIGMFEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVKLKKLKHLDLGGSYFNGQIPAVYSEMQSLEFLSVRGNTLSGRIPASLARLKNLKYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKILILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISTNYFSGALPSQMSGEFLGTLQLNNNNITGEIPAAIKNLKNLQVVSLEHNQFNGKLPVEIFELSKLLRINISFNNISGEIPHSVVHCTSLTSIDLSKNDLVGTIPRGISKLKILSVFNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASMHRNLRSVKLIIPIVAIFIALLCALAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEDNIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28898855 28903638 + ClG42_05g0197900.10 Clacu05g1979 249726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1979 970 Gene3D Ribonuclease Inhibitor 145 229 IPR032675 -
Clacu05g1979 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 143 230 - -
Clacu05g1979 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 231 335 - -
Clacu05g1979 970 SUPERFAMILY L domain-like 380 623 - -
Clacu05g1979 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 759 968 - -
Clacu05g1979 970 Gene3D Transferase(Phosphotransferase) domain 1 759 964 - -
Clacu05g1979 970 Gene3D Ribonuclease Inhibitor 30 144 IPR032675 -
Clacu05g1979 970 SUPERFAMILY L domain-like 70 399 - -
Clacu05g1979 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1979 970 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Clacu05g1979 970 SUPERFAMILY Protein kinase-like (PK-like) 675 957 IPR011009 -
Clacu05g1979 970 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515(InterPro)
Clacu05g1979 970 Pfam Leucine Rich Repeat 462 481 IPR001611 GO:0005515(InterPro)
Clacu05g1979 970 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515(InterPro)
Clacu05g1979 970 Pfam Leucine Rich Repeat 293 313 IPR001611 GO:0005515(InterPro)
Clacu05g1979 970 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515(InterPro)
Clacu05g1979 970 Pfam Protein kinase domain 686 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1979 970 SMART serkin_6 684 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1979 970 Gene3D Ribonuclease Inhibitor 230 334 IPR032675 -
Clacu05g1979 970 ProSiteProfiles Protein kinase domain profile. 684 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1979 970 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 958 IPR050647 -
Clacu05g1979 970 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515(InterPro)
Clacu05g1979 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 653 758 - -
Clacu05g1979 970 SMART LRR_typ_2 243 267 IPR003591 -
Clacu05g1979 970 SMART LRR_typ_2 291 315 IPR003591 -
Clacu05g1979 970 SMART LRR_typ_2 121 145 IPR003591 -
Clacu05g1979 970 SMART LRR_typ_2 481 505 IPR003591 -
Clacu05g1979 970 SMART LRR_typ_2 553 577 IPR003591 -
Clacu05g1979 970 SMART LRR_typ_2 339 363 IPR003591 -
Clacu05g1979 970 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 627 - -
Clacu05g1979 970 Gene3D Phosphorylase Kinase; domain 1 649 758 - -
Clacu05g1979 970 Gene3D Ribonuclease Inhibitor 335 627 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1979 Clacu-Chr5:28898855 Clacu10g0808 Clacu-Chr10:13816678 1.70E-08 dispersed
Clacu09g1041 Clacu-Chr9:9900137 Clacu05g1979 Clacu-Chr5:28898855 4.70E-40 dispersed
Clacu05g1979 Clacu-Chr5:28898855 Clacu01g1868 Clacu-Chr1:30804642 1.30E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73589 PF00069 Pkinase 1.70E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1979 - - - 0.0