Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1984 ATGGGTTCAACACAATTTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAGTATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACAGGCTTCGTCCTTGCCGCCGGCGAGTCCAAAACAATCTCCGCTCCGGCATCTTGGGGTGGCCGATTCTGGGGCCGAACTCGCTGTTCAGAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCAACAAGGTCGAGTGCAGTGGAAACGGCGCGAAGCCACCGGCAACTCTGGCGGAGTTCACCCTTGACGGTGCCGGCGGGTTGGACTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGTGGCACCGGCGAGAAATGCGTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAACTCAAGGTTATGAGCGTTGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGCGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCGACTCCCGATACTTGTAAACCTTCTGCGTACTCGCAGGTGTTCAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGACACGACTAGCACGTTTACATGTGCCGACGCTGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACACGCCGGCGATCAACGGCGGAAACGGTACAATGGTTTACGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGAGAACAACGCTCCGCCAATTTCTTGGGGTAGTCGTTGCCGCCGTGGCAATTCTTCAAATTCAGCAACTCGTTTGA 933 51.88 MGSTQFSFLLYLLTIQISVSGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSEDSTGKFSCLTGDCGSNKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVMSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCKPSAYSQVFKNACPRAYSYAYDDTTSTFTCADADYIITFCPSPNTSQKSTDNHNTNTPAINGGNGTMVYEGAEYDLSGASRTTLRQFLGVVVAAVAILQIQQLV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28928643 28930205 - ClG42_05g0198400.10 Clacu05g1984 249731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1984 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Clacu05g1984 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Clacu05g1984 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Clacu05g1984 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Clacu05g1984 310 PANTHER OS03G0233200 PROTEIN 9 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Clacu05g1984 310 SMART tha2 27 247 IPR001938 -
Clacu05g1984 310 CDD TLP-PA 26 246 - -
Clacu05g1984 310 Gene3D Thaumatin 25 247 IPR037176 -
Clacu05g1984 310 PIRSF PR5 1 278 IPR001938 -
Clacu05g1984 310 Pfam Thaumatin family 31 247 IPR001938 -
Clacu05g1984 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Clacu05g1984 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Clacu05g1984 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1984 Clacu-Chr5:28928643 Clacu08g1588 Clacu-Chr8:25687075 7.00E-126 dispersed
Clacu05g2665 Clacu-Chr5:34287177 Clacu05g1984 Clacu-Chr5:28928643 3.80E-76 transposed
Clacu01g2101 Clacu-Chr1:32709313 Clacu05g1984 Clacu-Chr5:28928643 2.30E-76 wgd
Clacu05g1984 Clacu-Chr5:28928643 Clacu08g1587 Clacu-Chr8:25671424 1.30E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1984 - - - 0.0