Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1998 ATGGCACTCCTAACTAATTCCTCTACTGACCACAAGAAACCCCTCCGTAATAAACGCCGGAAAAAACACCCAACCCCAACTCCGCCACCCTCCTCCGCCCAATCCTCATGGGATCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGACGAAACGGTCACCGGCCTACTCCAAATTGGGCTCTTCTTGCAGTTCAATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAAGAAACCAGGTTGCTTACTAGAAAACCTGCTAACGGCTCTTCCTCTCGTTCTTTAACCGCGCCGCCACCGCCACCACCATCCAGAACTAAAACCGCTGCTTCGGCTTCTGCTTCCTACAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACACCATCGTTGACCCTAGCAGGTACCCAATTCCAAGGAGTTCTCTATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCTAAGGCTGAAAGCTTAGAGCTTCACCAATTAGTTCGCCACGCTGTTTCGGAATTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAGGATTGCCGTGACGCAGTGAAGACACGTGCGCTCGGAAGCACCAGAAAAAACCCGCGATGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGCCTTGTCGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGCAGTGTAATTCGTCATGGATTCCAGTGTAAGCCCGGTGGGCCCCCTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGCGGCGACGGAAGGAGACGTGCGATGTTGGTCTGCCGTGTAATCGCCGGGAGAGTGAAGCGGATCTCGGAGGAGGCTGCGACGGCGACGGCGACAGCGACGGAGGAGGAGAATCTGTCGATGGCGGCAGCCTCATACGACTCCGTTTCACGACACGCCGGGATGTACTCCAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTCATCTACGAAGCGCTCCAAACCTAA 1269 52.56 MALLTNSSTDHKKPLRNKRRKKHPTPTPPPSSAQSSWDHFKNLITCKQVEVSRSVQEPTKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPANGSSSRSLTAPPPPPPSRTKTAASASASYNSSSSRGLQLRKLSGCYECHTIVDPSRYPIPRSSLCPCPQCGEVFPKAESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALSCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPPGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEEAATATATATEEENLSMAAASYDSVSRHAGMYSNLEELIIFNPKAILPCFVVIYEALQT 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29011872 29014206 - ClG42_05g0199800.10 Clacu05g1998 249745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1998 422 SUPERFAMILY ADP-ribosylation 203 418 - -
Clacu05g1998 422 ProSitePatterns Zinc finger C2H2 type domain signature. 178 201 IPR013087 -
Clacu05g1998 422 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 417 - -
Clacu05g1998 422 MobiDBLite consensus disorder prediction 92 120 - -
Clacu05g1998 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
Clacu05g1998 422 MobiDBLite consensus disorder prediction 51 71 - -
Clacu05g1998 422 MobiDBLite consensus disorder prediction 1 39 - -
Clacu05g1998 422 Gene3D - 197 420 - -
Clacu05g1998 422 MobiDBLite consensus disorder prediction 89 144 - -
Clacu05g1998 422 FunFam C2H2-like zinc finger protein 202 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0934 Clacu-Chr3:12157026 Clacu05g1998 Clacu-Chr5:29011872 3.70E-85 dispersed
Clacu03g0937 Clacu-Chr3:12250916 Clacu05g1998 Clacu-Chr5:29011872 8.90E-12 dispersed
Clacu05g1646 Clacu-Chr5:24515990 Clacu05g1998 Clacu-Chr5:29011872 2.90E-48 dispersed
Clacu05g1998 Clacu-Chr5:29011872 Clacu10g0612 Clacu-Chr10:8293674 2.80E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47733 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1998 - - - 0.0