Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2009 ATGGCAGCGGCAACGGAGGGTGAAAAGGAGAAGTTTTCAGCAGCTGGGTCTCCATTCTCGCCAACCAATCGCCATAGCTCTGCTACTGATGTACCAATAAGAAATGGAAACACCAACAGAGAAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGTTTGTATGTGTGCGCGTTGCTTTAAGTGGAGAATCGTTGGGGTTCCGGCCCACACAACCACAGCCACAGCCACAGCCACAGCCACAGCCACAAAGTGTGTTTAGTCTCAAACGAAGCGAGAGAGAGATCCGATTAGCCGCAACCAAAAACCCATCTTCCCCGAGCGCAAAAGGCCACAAACAAACGTGTGGATCTCTAAACGCTACCCAATTTTATTGGTTCCCTTACAACCATGTTGTTGTTGTTCTCCATTTTTACGGATACATCAACCCCATTTCTCCATTTTCATCGGACCTCCATATTCCTATTTTGGCAATACCAAAACCCATCTCCCCAACTTCCCTTCACCAACCCAACATGTCTCTAGTCACTAAACTCCACATCGCCTTTTCTCCCCAATTCACCATCAACAACCTTCAAACTACAATTAAAACTACATCCATTCCCACTCACAACTCCAAGTTTCAATCCAAATCCATTTACATTTCTCACCCTTTGTTGTTTAAACCCGCAATGCAGGGCCATTCACCTCGTTCTCTTCGCTCCTCGATTAAGAGTTCGTTGATCGACCCCGACGGTGGGGCTGTCGTCGAGTTGATTGTGCCTGAGAGTGAAAGGGCCTCGAGGGTTTTGGAGGCTGAGCCATTGCCGAAGGTTAAATTGACCCAGATTGATCTTGAGTGGGTCCATGTCATTAGTGAAGGATGGGCGAGCCCGTTGAGAGGATTCATGAGAGAGGAGGAGTATTTGCAGAGTTTGCATTTCAATTGCCTCAAAATTAAAGACGGGTCTCTTGTAAACATGTCGCTTCCCATTGTTTTGGCCATTAACGACGACGTTAAGGACCAAATTGGGTCTTCGTCCAATGTGGGGTTGCTCGGTCCCAATGGAGATTTGGTTGGTATTCTTCGCAGCATTGAGATATTCAAGCATAATAAGGAAGAGAGAATAGCTAGAACTTGGGGCACAACTGCACCAGGGTTGCCATATGTTGATGAGGTCGTTACAAATGCTGGAAACTGGCTTATTGGTGGAGATCTTGAAGTATTAAACCCCATCAAATACAATGATGGACTCGATCATTATAGGCTGTCTCCAAAACAACTTCGGCAAGAGTTCGATAGGCGTCAGGCCGATGCTGTTTTTGCCTTTCAATTGAGGAACCCTGTACATAACGGCCACGCTTTGTTAATGAACGATACACGGAAGCGACTTCTGGACATGGGTTACAAGAATCCAATTCTATTGCTTCATCCTTTGGGAGGTTTCACAAAAGCAGATGATGTGCCATTGGACGTTCGAATGGAACAGCATAGCAAGGTTTTAGAAGATGGAGTCCTTGACCCTGAAACAACCATTGTCTCCATTTTCCCGTCGCCAATGCATTACGCTGGTCCAACCGAAGTACAATGGCATGCTAAAGCAAGGATCAATGCAGGTGCAAATTTCTACATTGTTGGTCGAGACCCTGCTGGAATGGGTCACCCAACAGAGAAGAGAGATTTATATGATCCAGACCATGGCAAGAAGGTCTTAAGTATGGCCCCTGGTCTTGAGAAGCTAAACATATTGCCCTTCAAGGTGGCAGCATACGATACTGTGGCAAAGAAAATGGCGTTTTTCGATCCTTCACGTGCAAAAGATTTCCTCTTCATCTCTGGAACAAAGATGCGGACATATGCAAGGACCGGCGAGAACCCTCCCGACGGTTTCATGTGCCCTGGCGGATGGAAGGTGTTGGTAAATTATTACGAGAGCTTGCAGGCAGAAGACGCGTCGCAGCAGCAGCCTGCATTCCTCTCAACTCTGATTCCTGCAACAAGAAGACGAAGCCCTCCCGATTCCGGCGACCTTGAAGAATGCCACTCTGCTCCGATCAGCTTCGATCTGTTCATGCTACTCAGATCCGCCTGCCTATTGTCCAAACCTAAGGTTTTTCTACTCAGATTCTGTGTATTCGTGTAG 2517 47.08 MAAATEGEKEKFSAAGSPFSPTNRHSSATDVPIRNGNTNRERKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVMLISIEVSDIKFVCVRVALSGESLGFRPTQPQPQPQPQPQPQSVFSLKRSEREIRLAATKNPSSPSAKGHKQTCGSLNATQFYWFPYNHVVVVLHFYGYINPISPFSSDLHIPILAIPKPISPTSLHQPNMSLVTKLHIAFSPQFTINNLQTTIKTTSIPTHNSKFQSKSIYISHPLLFKPAMQGHSPRSLRSSIKSSLIDPDGGAVVELIVPESERASRVLEAEPLPKVKLTQIDLEWVHVISEGWASPLRGFMREEEYLQSLHFNCLKIKDGSLVNMSLPIVLAINDDVKDQIGSSSNVGLLGPNGDLVGILRSIEIFKHNKEERIARTWGTTAPGLPYVDEVVTNAGNWLIGGDLEVLNPIKYNDGLDHYRLSPKQLRQEFDRRQADAVFAFQLRNPVHNGHALLMNDTRKRLLDMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRAKDFLFISGTKMRTYARTGENPPDGFMCPGGWKVLVNYYESLQAEDASQQQPAFLSTLIPATRRRSPPDSGDLEECHSAPISFDLFMLLRSACLLSKPKVFLLRFCVFV 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29086591 29096482 + ClG42_05g0200900.10 Clacu05g2009 249756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2009 838 CDD ATPS 400 767 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Clacu05g2009 838 MobiDBLite consensus disorder prediction 16 38 - -
Clacu05g2009 838 MobiDBLite consensus disorder prediction 1 38 - -
Clacu05g2009 838 MobiDBLite consensus disorder prediction 108 134 - -
Clacu05g2009 838 SUPERFAMILY PUA domain-like 375 539 IPR015947 -
Clacu05g2009 838 Gene3D Sulfate adenylyltransferase 371 539 - -
Clacu05g2009 838 NCBIfam sulfate adenylyltransferase 375 765 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Clacu05g2009 838 Pfam PUA-like domain 373 535 IPR025980 -
Clacu05g2009 838 FunFam bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 540 773 - -
Clacu05g2009 838 Gene3D HUPs 540 773 IPR014729 -
Clacu05g2009 838 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 368 760 - GO:0000103(PANTHER)|GO:0004020(PANTHER)
Clacu05g2009 838 Pfam ATP-sulfurylase 545 766 IPR024951 GO:0004781(InterPro)
Clacu05g2009 838 SUPERFAMILY Nucleotidylyl transferase 545 768 - -
Clacu05g2009 838 MobiDBLite consensus disorder prediction 199 218 - -
Clacu05g2009 838 FunFam ATP sulfurylase 2 371 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2009 K13811 - - csv:101217416 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2009 Clacu-Chr5:29086591 Clacu05g2374 Clacu-Chr5:32097827 5.90E-42 dispersed
Clacu05g2009 Clacu-Chr5:29086591 Clacu05g0548 Clacu-Chr5:4565667 4.40E-191 transposed
Clacu05g2009 Clacu-Chr5:29086591 Clacu06g0641 Clacu-Chr6:7350730 4.40E-191 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1086 Blo01g01591 . Bda01g00494 . Bpe02g00356 . . Bma01g02362 . . Cma01g01965 . Car01g01535 . . . . . . . . . . . . . . . . . . . . Cone17ag1393 Cone20ag0087 Lsi04g01731 Csa03g04268 Chy04g00427 . . . . . . . . . Sed01g2503 Cmo01g02023 . . . . . . Cpe02g00078 Bhi09g02099 Tan01g5005 Cmetu04g0401 . Hepe01g1625 Mch11g0129 . Cla05g01885 Cam05g2018 Cec05g2029 Cco05g2086 Clacu05g2009 Cmu05g1890 Cre05g2013 . . . Cme04g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93