Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g2012 | ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGGCACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCTAGAATGTCCGCTAATCGCATACCTTCCGACGTACCCGCCGGACATGTGGCTGTCTGTGTCGGAACCAGCTGCCGGCGCTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTTCAAGCCGAAGAGGAGTACGGGTTCACCAATCAAGGCCCTTTGGCAATTCCTTGCGAAGAGTCGGTATTTGAAGAAGTCATCCGGTTCATCTCCAGATCGGAGTCTCCCAACTCGGGTCGGTTCGTGAAATTGGACGATTTTCAAAGTTATTGTCATATCGGAATCAGAACCGGGCTCGATTTATGGCCGGAATCCCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATTTGCTCCGGAGAATGCTTATGGAGATGGCAAAACTGGTGGAGGGATCATTTCACCGTGTCGTCCCGAGCCCGAATCGGAGTCGGGGCGAAACCTAGAAGGAAGAAGAACAACAACGACAACAGAGAAAGTGTTGCTAATTTGGCCAGAGGTCTATTTTCTGTAAATTAA | 615 | 51.87 | MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCEESVFEEVIRFISRSESPNSGRFVKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSICSGECLWRWQNWWRDHFTVSSRARIGVGAKPRRKKNNNDNRESVANLARGLFSVN | 204 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 29142112 | 29143014 | - | ClG42_05g0201200.10 | Clacu05g2012 | 249759 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g2012 | 204 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 17 | 101 | IPR003676 | GO:0009733(InterPro) | |
| Clacu05g2012 | 204 | Pfam | Auxin responsive protein | 16 | 102 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0482 | Clacu-Chr2:4295464 | Clacu05g2012 | Clacu-Chr5:29142112 | 3.40E-49 | dispersed | |
| Clacu04g0967 | Clacu-Chr4:23859187 | Clacu05g2012 | Clacu-Chr5:29142112 | 5.30E-16 | dispersed | |
| Clacu05g2834 | Clacu-Chr5:35595309 | Clacu05g2012 | Clacu-Chr5:29142112 | 5.90E-18 | transposed | |
| Clacu09g0176 | Clacu-Chr9:1687887 | Clacu05g2012 | Clacu-Chr5:29142112 | 6.50E-19 | transposed | |
| Clacu11g0527 | Clacu-Chr11:4904690 | Clacu05g2012 | Clacu-Chr5:29142112 | 9.40E-47 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g2012 | K14488 | - | csv:101216342 | 301.597 |