Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2015 ATGGGCTCTGTGGAAGAGAAGCTCAAGACATCAGGGGGGTTGATTAATAACGGCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGTTATGGCACGCTTGTGCAGGTCCGCTTGTTTCCTTGCCCCATGTGGGTAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCGCAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTACGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCTTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAATGAGTTTTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACTCAGGAGCTCGTTGTTAGAGACTTGCATGACAATACCTGGACTTTTCGCCACATATACCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCAGTTCTATCTGCCGATAGTATGCATATTGGGGTTCTTGCAGCTGCAGCTCATGCTGCTGCCAATCGAAGTCCATTTACAATCTTCTACAACCCCAGGGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATATATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGAGAAATCTTCAGGTTGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCAGGTCTTAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGACTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGTGGGGATCTTTCATATGCGCCAACTTTATGCTCTGAACCACTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTTCAGGGAACCACCTTACAGCAGGATTCAGTTAACAATTTAGTTAAGATACAGGACATGAAGGACATGCAGCCAGTGACCAAAATGCAGCAGCTTATACCATCAGAAACTGCATCTCCCGGGAATCAAAATCATCATCATCATCCAGCACCTACACAATCTGATGTCATAAACCCAAATTCATCACCAAAAGAAAATCTACCCGGAAAAGTACACACTTCGGCGGCCATTGAAAGTGAAGCTCCAACTGCAGCTGATGTAGACAAGGCGAAATATGAACGTGATCTTTCAACCAATCAGTCCAATCCATTGCCCTCAGTTGGAGATTGTGGGGAGGAAAAACTCACTGGTAACGAAGTGAATATGCAAACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATTCCCATGCAGTTGCAATCCGTATCATGGCCCATGCAGCCGCAGCTTGAGTCACTAATCCAACACCCACAACCAACTGACATGTCTCAGCCTGAATTTACGAATTCAAATGGTTTGATTTCATCCTTGGATGGCGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCAGGGAATCTTTCCATGTTAGGACTGCAAGACTCTTCAACAGTCTTTCCTGAGGCTCTTAATTTTCCCTTACCCTCAACAGGCCAAGACATGTGGGATCCTCTTAACAATATAAGGTTCTCATCCCAAACCAATCATCTCGTCTCATTCTCTCATCCAGACGTATCTAACCTCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAGTACTTTGGTTGATCATGCCGTTTCAAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTCACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCTAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTATGACGAACTGTGCTCTGCTATCGAATGTATGTTTGGACTTGAGGGGTTGCTTAATGATCCAAGAGGGTCGGGATGGAAACTGGTTTATGTGGATTATGAGAATGATGTCCTGCTTATTGGTGATGATCCGTGGGAGGAATTTGTTAGCTGTGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTCCTATGATGCAAGATCCTGGCCTCAAATTTATCTGGGTATGCGAGGTTCACGATGGAGCCATATCTTTGTTGCCTGTCTTTCATTTGCATATTTCCGTTCTCTAG 2901 44.71 MGSVEEKLKTSGGLINNGPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLQGTTLQQDSVNNLVKIQDMKDMQPVTKMQQLIPSETASPGNQNHHHHPAPTQSDVINPNSSPKENLPGKVHTSAAIESEAPTAADVDKAKYERDLSTNQSNPLPSVGDCGEEKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPTDMSQPEFTNSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEALNFPLPSTGQDMWDPLNNIRFSSQTNHLVSFSHPDVSNLNCMANANIMRDVSDESNNQSGIYSCSNLEISNGGSTLVDHAVSSTILDDYCTLKDAHFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSPMMQDPGLKFIWVCEVHDGAISLLPVFHLHISVL 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29170340 29175170 + ClG42_05g0201500.10 Clacu05g2015 249762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2015 966 SUPERFAMILY CAD & PB1 domains 836 913 - -
Clacu05g2015 966 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Clacu05g2015 966 Gene3D - 147 250 IPR015300 -
Clacu05g2015 966 FunFam Auxin response factor 313 385 - -
Clacu05g2015 966 MobiDBLite consensus disorder prediction 484 538 - -
Clacu05g2015 966 Gene3D - 313 385 - -
Clacu05g2015 966 FunFam Auxin response factor 830 923 - -
Clacu05g2015 966 FunFam Auxin response factor 147 251 - -
Clacu05g2015 966 Pfam AUX/IAA family 835 922 IPR033389 -
Clacu05g2015 966 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Clacu05g2015 966 ProSiteProfiles PB1 domain profile. 834 918 IPR053793 -
Clacu05g2015 966 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu05g2015 966 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Clacu05g2015 966 MobiDBLite consensus disorder prediction 484 517 - -
Clacu05g2015 966 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 926 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu05g2015 966 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Clacu05g2015 966 Gene3D - 831 923 - -
Clacu05g2015 966 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0651 Clacu-Chr3:7105734 Clacu05g2015 Clacu-Chr5:29170340 2.50E-171 dispersed
Clacu05g2015 Clacu-Chr5:29170340 Clacu11g0281 Clacu-Chr11:2590416 9.70E-174 dispersed
Clacu05g2015 Clacu-Chr5:29170340 Clacu01g2567 Clacu-Chr1:35910482 4.40E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47734 PF02309 AUX_IAA 1.10E-09 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2015 K14486 - csv:101216825 1818.13