Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g2030 | ATGACGGATTTGTTCTATTTAGATCGGAAACAAGAGGAAGATCCAGAAGAAAGAGCAAGATCAGAACAACAATTGTTTTTATACAGCAGATCAAACAATAACCAAGAGATCTACTCCACCGGATTGCAGATATGGCCACAATATACTCACAACCATCATCATCCTCAACAACAACAAAATGTAGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGAACGACGAGCTTCATGATCAACGGCTCTGATCATGACTTTACTTCAAGATCAGGGTTTACTATGATGAGACATGGACATGGAGGAGGATCAGGAGGAGCGAGTGGGATGAATTGTCAAGACTGTGGGAATCAAGCTAAGAAGGATTGTTCTCATTTGAGGTGTAGAACTTGTTGTAAGAGTCGAGGGTTTCACTGTCAAACTCATGTTAAGAGTACTTGGGTTCCAGCTGCTAAACGTCGGGAACGCCAGCAACAACGTCACCAACAATTTCGAACAGATCAGTCAGATCAGATCACTCCCAAAAACCATAGACAACATCAACTATCTCTTCCTCTTACTACCAATTCGGGGTTAGAAGTAGCAAATTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCGATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCCGAAAGCAGTCAAAATTTGAGCACCGGCGGGGACGACAGAGAAGACGGTGGCCAAGGGTTGGATCTGGTGATCGGAGCATCCAACAGTGGTGGAAGAGTTAACCAAACCACCCCATTTGTGGAGTCTTCCATGTATCCCATCCCAATCAACACATTCGCTGGAAATGGGGTGGGCCCAGTCGCGTACGCTCAAGCAAATGTGGAACAAACCGAGCCCAATTTTACTTGGGCTACTACTCAAACAGGTATCCATGAAATGATGAGAAGTGGGCCTCTTTTGGGCTGA | 1014 | 44.28 | MTDLFYLDRKQEEDPEERARSEQQLFLYSRSNNNQEIYSTGLQIWPQYTHNHHHPQQQQNVENYISFGVGPSRTTSFMINGSDHDFTSRSGFTMMRHGHGGGSGGASGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQFRTDQSDQITPKNHRQHQLSLPLTTNSGLEVANFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSQNLSTGGDDREDGGQGLDLVIGASNSGGRVNQTTPFVESSMYPIPINTFAGNGVGPVAYAQANVEQTEPNFTWATTQTGIHEMMRSGPLLG | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29263007 | 29268677 | + | ClG42_05g0203000.10 | Clacu05g2030 | 249777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g2030 | 337 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 11 | 296 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Clacu05g2030 | 337 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Clacu05g2030 | 337 | NCBIfam | putative zinc finger domain, LRP1 type | 110 | 152 | IPR006510 | - | |
Clacu05g2030 | 337 | MobiDBLite | consensus disorder prediction | 150 | 181 | - | - | |
Clacu05g2030 | 337 | MobiDBLite | consensus disorder prediction | 163 | 181 | - | - | |
Clacu05g2030 | 337 | Pfam | Domain of unknown function (DUF702) | 108 | 244 | - | - | |
Clacu05g2030 | 337 | NCBIfam | LRP1 C-terminal domain | 196 | 243 | IPR006511 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2337 | Clacu-Chr2:36422247 | Clacu05g2030 | Clacu-Chr5:29263007 | 2.00E-32 | dispersed | |
Clacu05g2030 | Clacu-Chr5:29263007 | Clacu07g0884 | Clacu-Chr7:22016079 | 1.10E-42 | dispersed | |
Clacu09g1418 | Clacu-Chr9:19681662 | Clacu05g2030 | Clacu-Chr5:29263007 | 6.80E-102 | transposed | |
Clacu01g2063 | Clacu-Chr1:32405716 | Clacu05g2030 | Clacu-Chr5:29263007 | 1.90E-52 | wgd | |
Clacu05g2030 | Clacu-Chr5:29263007 | Clacu08g1620 | Clacu-Chr8:25978250 | 1.20E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47736 | PF05142 | DUF702 | 1.40E-58 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g2030 | K27807 | - | csv:101218246 | 440.269 |