Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2030 ATGACGGATTTGTTCTATTTAGATCGGAAACAAGAGGAAGATCCAGAAGAAAGAGCAAGATCAGAACAACAATTGTTTTTATACAGCAGATCAAACAATAACCAAGAGATCTACTCCACCGGATTGCAGATATGGCCACAATATACTCACAACCATCATCATCCTCAACAACAACAAAATGTAGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGAACGACGAGCTTCATGATCAACGGCTCTGATCATGACTTTACTTCAAGATCAGGGTTTACTATGATGAGACATGGACATGGAGGAGGATCAGGAGGAGCGAGTGGGATGAATTGTCAAGACTGTGGGAATCAAGCTAAGAAGGATTGTTCTCATTTGAGGTGTAGAACTTGTTGTAAGAGTCGAGGGTTTCACTGTCAAACTCATGTTAAGAGTACTTGGGTTCCAGCTGCTAAACGTCGGGAACGCCAGCAACAACGTCACCAACAATTTCGAACAGATCAGTCAGATCAGATCACTCCCAAAAACCATAGACAACATCAACTATCTCTTCCTCTTACTACCAATTCGGGGTTAGAAGTAGCAAATTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCGATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCCGAAAGCAGTCAAAATTTGAGCACCGGCGGGGACGACAGAGAAGACGGTGGCCAAGGGTTGGATCTGGTGATCGGAGCATCCAACAGTGGTGGAAGAGTTAACCAAACCACCCCATTTGTGGAGTCTTCCATGTATCCCATCCCAATCAACACATTCGCTGGAAATGGGGTGGGCCCAGTCGCGTACGCTCAAGCAAATGTGGAACAAACCGAGCCCAATTTTACTTGGGCTACTACTCAAACAGGTATCCATGAAATGATGAGAAGTGGGCCTCTTTTGGGCTGA 1014 44.28 MTDLFYLDRKQEEDPEERARSEQQLFLYSRSNNNQEIYSTGLQIWPQYTHNHHHPQQQQNVENYISFGVGPSRTTSFMINGSDHDFTSRSGFTMMRHGHGGGSGGASGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQFRTDQSDQITPKNHRQHQLSLPLTTNSGLEVANFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSQNLSTGGDDREDGGQGLDLVIGASNSGGRVNQTTPFVESSMYPIPINTFAGNGVGPVAYAQANVEQTEPNFTWATTQTGIHEMMRSGPLLG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29263007 29268677 + ClG42_05g0203000.10 Clacu05g2030 249777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2030 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 11 296 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Clacu05g2030 337 MobiDBLite consensus disorder prediction 1 21 - -
Clacu05g2030 337 NCBIfam putative zinc finger domain, LRP1 type 110 152 IPR006510 -
Clacu05g2030 337 MobiDBLite consensus disorder prediction 150 181 - -
Clacu05g2030 337 MobiDBLite consensus disorder prediction 163 181 - -
Clacu05g2030 337 Pfam Domain of unknown function (DUF702) 108 244 - -
Clacu05g2030 337 NCBIfam LRP1 C-terminal domain 196 243 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2337 Clacu-Chr2:36422247 Clacu05g2030 Clacu-Chr5:29263007 2.00E-32 dispersed
Clacu05g2030 Clacu-Chr5:29263007 Clacu07g0884 Clacu-Chr7:22016079 1.10E-42 dispersed
Clacu09g1418 Clacu-Chr9:19681662 Clacu05g2030 Clacu-Chr5:29263007 6.80E-102 transposed
Clacu01g2063 Clacu-Chr1:32405716 Clacu05g2030 Clacu-Chr5:29263007 1.90E-52 wgd
Clacu05g2030 Clacu-Chr5:29263007 Clacu08g1620 Clacu-Chr8:25978250 1.20E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47736 PF05142 DUF702 1.40E-58 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2030 K27807 - csv:101218246 440.269