Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2031 ATGGCTGATGGAGGATCAGTTTCTGGGTCAAGAATGTGGTGTTCAATTCCTGAGAAGCTTCAACTGCATGGCGCCATGTTGGCCTTGCAATTTGGCTATGCTGGCTTCCACGTTGTCTCAAGGGCTGCTCTTAATATGGGCATTAGTAAACTTGTCTTCCTAGTTTATAGGAACATCATTGCCTTTTTGCTTCTACTTCCCTTTGCATATTTCCTCGAAAAGAAAGAGCGCCCTCCCATTACTTTCAATTTTCTCCTTCAGTTCTTCCTCCTTGCCCTTGTTGGAATCACGGCAAACCAAGGGTTCTACTTGCTAGGTTTGGAGAACACGTCCCCGACGTTTGCATCAGCTATACAAAACTCTGTTCCGGCCATTACATTCCTCATGGCTGCATTGCTCAGAATAGAAGAAGTGCGACTAAACAGAAAAGATGGTATAGCAAAAGTGATTGGAACGATATGCTGTGTTGCTGGGGCCACAGTGATCACTCTGTACAAAGGTCCAACAATATACAGCCCAGTTCATTCACTACAAACAGCTGCCACCACCACTAGCGCACCCATTTTCGCTTCTCTTGGGGACGCAACCGGGAAAAGCTGGACCCTTGGCTGTGTCTTTTTGATCGGTCATTGCTTGTCTTGGTCTGGATGGCTTGTTTTGCAAGCACCCGTTTTGAAAAAATACCCAGCTCGTCTCTCTGTCACTTCTTATACTTGTTTCTTTGGGATAATCCAATTTATCATCATCGCTGCCATTGCGGAGCGAGATGTTGAGGCTTGGCTCTTTCACTCCGGTGGTGAAATCTTTAGCGTCCTGTATGCGGGAGTGGTAGCTTCGGGAATTGCTTTCGCAGTGCAGACATGGTGTATTCAAAGAGGTGGGCCTGTGTTCGTTGCTGTTTACCAACCAGTTCAGACTTTGGTTGTCGCTGTCATGGCTTCCTTCGCCTTGGGTGAAGAGTTCTTCTTGGGAGGGATCATCGGGGCGGTATTGATCATCGCCGGCTTATACTTCGTCTTATGGGGCAAAAGCGAAGAGAGAAAATTTGCACTTGAGAAGGCTGCAATCCTCTCCACTCCGGACCACACTAACAACAGAACACCCCCACTCATCAAGCCCTCTATTACTCAGCCACTTCTCATCCACTCATCAAACGACAACGTTTGA 1167 47.3 MADGGSVSGSRMWCSIPEKLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFLLLLPFAYFLEKKERPPITFNFLLQFFLLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAALLRIEEVRLNRKDGIAKVIGTICCVAGATVITLYKGPTIYSPVHSLQTAATTTSAPIFASLGDATGKSWTLGCVFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFIIIAAIAERDVEAWLFHSGGEIFSVLYAGVVASGIAFAVQTWCIQRGGPVFVAVYQPVQTLVVAVMASFALGEEFFLGGIIGAVLIIAGLYFVLWGKSEERKFALEKAAILSTPDHTNNRTPPLIKPSITQPLLIHSSNDNV 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29288267 29291048 + ClG42_05g0203100.10 Clacu05g2031 249778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2031 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 345 - -
Clacu05g2031 388 PANTHER WAT1-RELATED PROTEIN 25 352 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu05g2031 388 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020(InterPro)
Clacu05g2031 388 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
Clacu05g2031 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2031 Clacu-Chr5:29288267 Clacu06g1558 Clacu-Chr6:26488665 1.70E-105 dispersed
Clacu05g2031 Clacu-Chr5:29288267 Clacu08g1626 Clacu-Chr8:26046610 1.90E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2031 - - - 0.0