Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2034 ATGAGTTTTGCTTGGTCTACTGCTTTGCTCGAGTTTGTCATGCTGGGCGTTCCATATTTTATGCGCATACAACTGCCAACGGATTTTGGATTTGAGAGAATCAGAGCACTAAATCACCTGAGTTTGGCCCGTCCAAGGCGAAGGGGGCCGATTAGAGAGATCGAACTCCATGAAACATCTTCCTCCTCATCGCAACGGCGACTCCCAAATCGTGCTCCTCTCTTCCTCCGCCGCTCTCTTAACTTAGCCTTTCAATCAGTCAACTGCTTTATTCTCTCCGGCCGACGGGGTATCATGGACGTCGATCCTCGTTACTACGACCACATCGCTGTCAATGATGGTGATGTTCAGAACATTGTTTTATCGTACCTTGTTCATAATTGTTATAAAGAAACTGCAGAGTCGTTCACTATCTGTACTGGGCTTAAGCAGCACACGGATTATCTTGTTGACATGGAAAAAAGAAAAAGAATTTATGATTTTGCAGTAGAAGGGAATGCACTTAAGGCCATTGTGTTAACAGAAGAGGTAGCACATGGTTTACTTGAGAAGAATGAGGACCTGCATTTTGATCTTTTAAGTCTTCATTTTGTTGAACTTGTTTGCTCTAGGAAATGCACAGAGGCCCTGGAATTTGCTCAGGTCAAGCTTGCTCCTTTCGGAAAGTTGCATAAATATGTGGAAAAACTTGAAGATTTCATGGCCCTCCTTGCTTACGAAGAACCAGAGAAGTCTCCAATGTTTCATCTGCTTAGTGTGGATTACCGGCAAAGAGTAGCAGAAAGTCTAAATCGAGCAATTCTTGCACATGGAAATTTGCCGAGCTATACGGCAATGGAAAGGCTGATAAAGCAGGCGACTGTAGTTAGACAGTCCTTGAGCCAAGAGCTGGGCAAGGATGGGATTCAATCATTTTCTTTGAGGGATTTTCTGAAAAGCTAA 942 43.74 MSFAWSTALLEFVMLGVPYFMRIQLPTDFGFERIRALNHLSLARPRRRGPIREIELHETSSSSSQRRLPNRAPLFLRRSLNLAFQSVNCFILSGRRGIMDVDPRYYDHIAVNDGDVQNIVLSYLVHNCYKETAESFTICTGLKQHTDYLVDMEKRKRIYDFAVEGNALKAIVLTEEVAHGLLEKNEDLHFDLLSLHFVELVCSRKCTEALEFAQVKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAESLNRAILAHGNLPSYTAMERLIKQATVVRQSLSQELGKDGIQSFSLRDFLKS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29304996 29309764 - ClG42_05g0203400.10 Clacu05g2034 249781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2034 313 SMART toby_final6 204 299 IPR013144 -
Clacu05g2034 313 SMART ctlh 151 208 IPR006595 -
Clacu05g2034 313 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 151 208 IPR006595 -
Clacu05g2034 313 ProSiteProfiles LIS1 homology (LisH) motif profile. 112 144 IPR006594 GO:0005515(InterPro)
Clacu05g2034 313 PANTHER RAN BINDING PROTEIN 9-RELATED 103 291 IPR050618 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0043161(PANTHER)
Clacu05g2034 313 Pfam CTLH/CRA C-terminal to LisH motif domain 152 293 IPR024964 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2034 K23338 - - csv:101218951 405.986
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013213 2 1 1 3 2 1 2 0 1 1 0 1 1 1 1 2 0 2 1 0 1 1 1 0 0 0 0 0 0 1 27