Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2039 ATGACGAGCGCCTCTCTTGCCGGGTTTTCCCCCCGCCCTTCAATCCGAGAAACCTGTTCTCCATGCACTTCTTCGAACCAGAATCGCATATTCCTCCCCTCCACCACAAGAAAAGATGCGAGGAATTCTATCAGTACCCTTAGAAGTGCTTTTCAACAAGAGCCTGCCCTCGTGTCCTCTGATAATCTCCCTTTCCATGGTTCTTTTGTCAAGCCTATTCAGGAAGTAGGAGGAACCGGAGATGTTGATGAACTTATCCATGGCGTCTCGAGCACTGAACCAGAGCCTAAATCGCAGTTACCGAGCAGGGTTAAAAAGAAGACACAAGAAGATGGGGATAGCCTCGAGAGTAGGTTTAAGCTGCGAAATGGAAGGGAGGTTTTTGAAGAAAAAGCCTACCTCGTTGGTGTAGAGCGGAAAGGAGATGTTGACCAACTTTTTAGCATAGACGAATCTCTGAAAGAACTGGCACAGTTAGCTGACACAGCTGGACTAAAGGTCGTTGGTTCAACATATCAAAAACTAGCTTCTCCAAATCCAAGGACTTACATAGGATCTGGCAAAGTTGCAGAAATCAAGAGTGCAATTCATGCATTAGGTATAGAGACTGTGATATTTGATGATGAGCTTTCAGCTGGGCAACTGAGAAACTTGGAAAAATCATTTGGTGGAGATGTAAGAGTTTGTGATCGCGCTGCCCTAATCCTGGACATCTTCAATCAGAGAGCAGCAACACATGAGGCATCTCTACAGGTGGCATTGGCACAAATGGAGTACCAGTTACCTCGACTTACAAAGATGTGGACTCACCTTGAGCGTCAGGCAGGAGGGCAGGTGAAAGGTATGGGTGAGAAACAAATTGAAGTGGATAAGCGTATCTTACGAACACAAATTGGTGTTCTCCGTAAGGAATTAGAGTCTGTCAGGGTGCATCGAAAACAGTACAGAAGCCGACGCTTTTCTGTACCTGTCCCAGTAGTTTCTTTGGTTGGATATACAAATGCTGGAAAGAGTACGCTCTTGAATCAGTTGACTGGAGCTGAAGTCCTTGCGGAGGATCGGTTGTTTGCAACCCTTGATCCAACTACAAGGAGGGTTCAGATGAAGAATGGGAACGAGTTTCTACTTACAGATACTGTTGGTTTCATCCAAAAGTTACCAACTATGCTGGTTGCTGCATTCAGAGCAACATTAGAGGAGATATCAGAATCATCATTGCTGGTTCACGTGGTGGACATCAGCCATCCACTGGCTGAGCAACAGATAGAGGCTGTGGATAAAGTTCTTTCAGAATTGGATGTGTCATCAATTCCGAAGTTGATGGTTTGGAACAAGGTTGACAAGGTTAGTGATCCTCAACATATTAGACTGGAAGCAGATAAAAGAGGAGACGTTGTTTGTGTATCTGCGCTGAGTGGTGATGGTTTGGACGAATTCTGTGATGCAGTTCAGGGCAAATTAAAGGACTCAATGGTTTGGGTAGAAGCCTTGATCCCGTTTGATCGGGGTGAGCTCCTGAGCACTGTGCATCAGGTTGGAATGGTAGAGAAAACTGAATATACAGAAAACGGAACACTGGTCCATGCATACGTTCCCCTCAGCTTGCCCAAATCTTTTACAAAATCAGCTCAAATTTCCCATATTCAAACTCCGCCGACTGAAGCTGCATGGTCAACATTTAGAAACTAA 1689 45.17 MTSASLAGFSPRPSIRETCSPCTSSNQNRIFLPSTTRKDARNSISTLRSAFQQEPALVSSDNLPFHGSFVKPIQEVGGTGDVDELIHGVSSTEPEPKSQLPSRVKKKTQEDGDSLESRFKLRNGREVFEEKAYLVGVERKGDVDQLFSIDESLKELAQLADTAGLKVVGSTYQKLASPNPRTYIGSGKVAEIKSAIHALGIETVIFDDELSAGQLRNLEKSFGGDVRVCDRAALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQAGGQVKGMGEKQIEVDKRILRTQIGVLRKELESVRVHRKQYRSRRFSVPVPVVSLVGYTNAGKSTLLNQLTGAEVLAEDRLFATLDPTTRRVQMKNGNEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMVWNKVDKVSDPQHIRLEADKRGDVVCVSALSGDGLDEFCDAVQGKLKDSMVWVEALIPFDRGELLSTVHQVGMVEKTEYTENGTLVHAYVPLSLPKSFTKSAQISHIQTPPTEAAWSTFRN 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29339154 29346675 + ClG42_05g0203900.10 Clacu05g2039 249786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2039 562 Pfam GTP-binding GTPase Middle Region 242 319 IPR032305 -
Clacu05g2039 562 FunFam GTPase HflX 324 493 - -
Clacu05g2039 562 Pfam 50S ribosome-binding GTPase 327 445 IPR006073 GO:0005525(InterPro)
Clacu05g2039 562 Gene3D - 324 491 IPR027417 -
Clacu05g2039 562 PRINTS GTP1/OBG GTP-binding protein family signature 394 412 IPR006073 GO:0005525(InterPro)
Clacu05g2039 562 PRINTS GTP1/OBG GTP-binding protein family signature 327 347 IPR006073 GO:0005525(InterPro)
Clacu05g2039 562 NCBIfam GTPase HflX 132 485 IPR016496 GO:0005525(InterPro)
Clacu05g2039 562 CDD HflX 284 487 IPR030394 GO:0005525(InterPro)
Clacu05g2039 562 Pfam HflX C-terminal domain 457 526 IPR045498 -
Clacu05g2039 562 Gene3D - 143 242 IPR042108 -
Clacu05g2039 562 NCBIfam small GTP-binding protein domain 326 483 IPR005225 GO:0005525(InterPro)
Clacu05g2039 562 MobiDBLite consensus disorder prediction 81 115 - -
Clacu05g2039 562 FunFam Predicted protein 144 266 - -
Clacu05g2039 562 MobiDBLite consensus disorder prediction 99 115 - -
Clacu05g2039 562 MobiDBLite consensus disorder prediction 1 26 - -
Clacu05g2039 562 Pfam GTP-binding GTPase N-terminal 151 239 IPR025121 -
Clacu05g2039 562 Gene3D - 243 310 - -
Clacu05g2039 562 Hamap GTPase HflX [hflX]. 153 516 IPR016496 GO:0005525(InterPro)
Clacu05g2039 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 497 IPR027417 -
Clacu05g2039 562 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 325 491 IPR030394 GO:0005525(InterPro)
Clacu05g2039 562 PANTHER GTP-BINDING PROTEIN HFLX 99 523 IPR016496 GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0043022(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2039 K03665 - - csv:101219907 976.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2039 Clacu-Chr5:29339154 Clacu07g0976 Clacu-Chr7:24090859 2.80E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30