Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2054 ATGACCTCTGCAACTTCCCCTCCTTCCGTCGTATCGAAAGTGAAAGCAGAGAAGAAAGATTTCCTTCACCTTAGTGATTTTGATAAATCCACCCTCTTGAAGATCTTAGACCGTGCAGTTGAAGTTAAAGCGCAACTGAAATCTGGTGACAGGACATTTCTCCCATTTAAAGGGAAGACAATGGCTATGATCTTTGCAAAACCATCCATGAGAACCAGAGTTTCATTTGAGACTGGTTTCTTCTTGCTAGGGGGCCATGCCATATATTTAGGGCCTGACACCATCCAAATGGGAAAAAGAGAGGAAACTAGGGATATTGCTCGTGTTTTGTCTCGCTATAATGATGTCATCATGGCCCGTGTTTTTGGTCATCAGGATATTCTTGATTTAGCTAAATATTCCACCGTGCCTGTAATAAATGGCCTGACGGATTACAACCATCCTTGTCAAGTAATGGCTGATGCACTCACTATGATTGAACACATTGGCAAGTTAGAAGGAACAAAGGTTGTGTATGTTGGAGATGGGAATAACATGGTGCACTCGTGGTTGTTGTTGGCATCAGTGGTACCCCTCCACTTTGTTTGTGCCTGTCCTAAAGGTTTTGAGCCGGATAAGAATACAGTTGAAAAGGCCCGACAAGCTGGAGTTAGCAAGATTGAGATTACCAATGATCCCAAGGAAGCAGTGAAAGGCGCTGATGTTGTGTACTCGGATGTCTGGGCCAGCATGGGACAAAAAGAGGAGGCTGAATATCGGCGTCAAGTGTTTCAAGGCTTCCAGGTTAACGAAGAGCTCATGAACTTAGCAGGTTCGAGGGCTTATTTCATGCATTGCTTACCAGCAGAGAGAGGCGTAGAGGTGACAGATGGGGTAATTGAGGCTCCCAACTCCATTGTGTTTCCTCAAGCTGAGAATCGAATGCACGCACAGAATGCTATAATGCTTCATGTTCTTGGCTTATGA 966 44.62 MTSATSPPSVVSKVKAEKKDFLHLSDFDKSTLLKILDRAVEVKAQLKSGDRTFLPFKGKTMAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDTIQMGKREETRDIARVLSRYNDVIMARVFGHQDILDLAKYSTVPVINGLTDYNHPCQVMADALTMIEHIGKLEGTKVVYVGDGNNMVHSWLLLASVVPLHFVCACPKGFEPDKNTVEKARQAGVSKIEITNDPKEAVKGADVVYSDVWASMGQKEEAEYRRQVFQGFQVNEELMNLAGSRAYFMHCLPAERGVEVTDGVIEAPNSIVFPQAENRMHAQNAIMLHVLGL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29468870 29474730 + ClG42_05g0205400.10 Clacu05g2054 249801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2054 321 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 18 320 IPR024904 GO:0004585(InterPro)|GO:0006591(InterPro)
Clacu05g2054 321 FunFam ornithine carbamoyltransferase, chloroplastic 19 154 - -
Clacu05g2054 321 PRINTS Ornithine carbamoyltransferase signature 136 150 IPR002292 GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Ornithine carbamoyltransferase signature 96 109 IPR002292 GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Ornithine carbamoyltransferase signature 63 77 IPR002292 GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Ornithine carbamoyltransferase signature 236 246 IPR002292 GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Ornithine carbamoyltransferase signature 298 309 IPR002292 GO:0016743(InterPro)
Clacu05g2054 321 Gene3D Aspartate/ornithine carbamoyltransferase 21 315 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 13 320 - GO:0004585(PANTHER)|GO:0019240(PANTHER)|GO:0042450(PANTHER)|GO:0043231(PANTHER)
Clacu05g2054 321 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 166 317 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 147 158 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 272 281 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 65 84 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 284 307 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 NCBIfam ornithine carbamoyltransferase 19 319 IPR002292 GO:0016743(InterPro)
Clacu05g2054 321 Gene3D Aspartate/ornithine carbamoyltransferase 150 306 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 FunFam Ornithine carbamoyltransferase 155 306 - -
Clacu05g2054 321 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 19 160 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Clacu05g2054 321 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 18 320 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2054 K00611 - - csv:101222023 629.787
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g970 Blo01g01571 . Bda01g00522 . Bpe02g00382 . . Bma01g02329 . . Cma01g01919 Cma09g00147 Car01g01500 . . Cpe06g00103 . . . . . . . . . . . . . . . . . . Cone20ag0133 Lsi04g01689 Csa03g04229 Chy04g00486 . . . . . . . . . . Cmo01g01982 Cmo09g00145 . . . Car09g00131 . Cpe02g00117 . . . . . . . Cla05g01923 Cam05g2060 Cec05g2073 Cco05g2124 Clacu05g2054 Cmu05g1931 Cre05g2054 . . . Cme04g00545
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 35