Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2058 ATGCAACATTCACGTGAGGCCGGGCCATGGCTCTATGAGTCTATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACGACAACCAAGTGTGGACCTCACCACAATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGTGAGCGACTACAGAGAAGAATCGTCCATGAGTTCAACGGACGAGAACCGAGAAACGGGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAGACGACCTACTGTTAATCACTTGGATTATTTGTTTCTCTCGTTGTTTTCTCCGCTGCTGTTCTCATTTTTTGCGGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCTGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1611 48.04 MQHSREAGPWLYESMQLQRTCIRLPTERPRQPSVDLTTINQQKGSTSASHIGEHGYFGVSDYREESSMSSTDENRETGGGGGDGDGETAAADNGDDGGDDLLLITWIICFSRCFLRCCSHFLRKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29510734 29514063 + ClG42_05g0205800.10 Clacu05g2058 249805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2058 536 Gene3D - 180 234 - -
Clacu05g2058 536 Gene3D Tubby Protein; Chain A 244 536 IPR025659 -
Clacu05g2058 536 CDD F-box_AtTLP-like 186 230 - -
Clacu05g2058 536 SUPERFAMILY Tubby C-terminal domain-like 235 536 IPR025659 -
Clacu05g2058 536 PANTHER TUBBY-RELATED 145 535 - -
Clacu05g2058 536 Pfam F-box-like 186 228 IPR001810 GO:0005515(InterPro)
Clacu05g2058 536 PRINTS Tubby superfamily signature 464 480 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 318 342 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 493 512 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 514 536 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 366 393 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 446 463 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Clacu05g2058 536 SUPERFAMILY F-box domain 175 229 IPR036047 GO:0005515(InterPro)
Clacu05g2058 536 MobiDBLite consensus disorder prediction 26 92 - -
Clacu05g2058 536 ProSitePatterns Tub family signature 1. 464 477 IPR018066 -
Clacu05g2058 536 MobiDBLite consensus disorder prediction 143 177 - -
Clacu05g2058 536 Pfam Tub family 247 531 IPR000007 -
Clacu05g2058 536 ProSitePatterns Tub family signature 2. 521 536 IPR018066 -
Clacu05g2058 536 MobiDBLite consensus disorder prediction 31 49 - -
Clacu05g2058 536 MobiDBLite consensus disorder prediction 143 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2058 Clacu-Chr5:29510734 Clacu08g0848 Clacu-Chr8:18524482 1.90E-118 dispersed
Clacu05g1148 Clacu-Chr5:10543232 Clacu05g2058 Clacu-Chr5:29510734 8.80E-119 transposed
Clacu09g0346 Clacu-Chr9:2985954 Clacu05g2058 Clacu-Chr5:29510734 5.20E-12 transposed
Clacu01g2022 Clacu-Chr1:32105999 Clacu05g2058 Clacu-Chr5:29510734 2.00E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47739 PF01167 Tub 3.00E-105 CL0395 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2058 K19600 - csv:101222500 751.125