Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2058 ATGCAACATTCACGTGAGGCCGGGCCATGGCTCTATGAGTCTATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACGACAACCAAGTGTGGACCTCACCACAATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGTGAGCGACTACAGAGAAGAATCGTCCATGAGTTCAACGGACGAGAACCGAGAAACGGGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAGACGACCTACTGTTAATCACTTGGATTATTTGTTTCTCTCGTTGTTTTCTCCGCTGCTGTTCTCATTTTTTGCGGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCTGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1611 48.04 MQHSREAGPWLYESMQLQRTCIRLPTERPRQPSVDLTTINQQKGSTSASHIGEHGYFGVSDYREESSMSSTDENRETGGGGGDGDGETAAADNGDDGGDDLLLITWIICFSRCFLRCCSHFLRKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29510734 29514063 + ClG42_05g0205800.10 Clacu05g2058 249805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2058 536 Gene3D - 180 234 - -
Clacu05g2058 536 Gene3D Tubby Protein; Chain A 244 536 IPR025659 -
Clacu05g2058 536 CDD F-box_AtTLP-like 186 230 - -
Clacu05g2058 536 SUPERFAMILY Tubby C-terminal domain-like 235 536 IPR025659 -
Clacu05g2058 536 PANTHER TUBBY-RELATED 145 535 - -
Clacu05g2058 536 Pfam F-box-like 186 228 IPR001810 GO:0005515(InterPro)
Clacu05g2058 536 PRINTS Tubby superfamily signature 464 480 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 318 342 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 493 512 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 514 536 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 366 393 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 446 463 IPR000007 -
Clacu05g2058 536 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Clacu05g2058 536 SUPERFAMILY F-box domain 175 229 IPR036047 GO:0005515(InterPro)
Clacu05g2058 536 MobiDBLite consensus disorder prediction 26 92 - -
Clacu05g2058 536 ProSitePatterns Tub family signature 1. 464 477 IPR018066 -
Clacu05g2058 536 MobiDBLite consensus disorder prediction 143 177 - -
Clacu05g2058 536 Pfam Tub family 247 531 IPR000007 -
Clacu05g2058 536 ProSitePatterns Tub family signature 2. 521 536 IPR018066 -
Clacu05g2058 536 MobiDBLite consensus disorder prediction 31 49 - -
Clacu05g2058 536 MobiDBLite consensus disorder prediction 143 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2058 K19600 - - csv:101222500 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2058 Clacu-Chr5:29510734 Clacu08g0848 Clacu-Chr8:18524482 1.90E-118 dispersed
Clacu05g1148 Clacu-Chr5:10543232 Clacu05g2058 Clacu-Chr5:29510734 8.80E-119 transposed
Clacu09g0346 Clacu-Chr9:2985954 Clacu05g2058 Clacu-Chr5:29510734 5.20E-12 transposed
Clacu01g2022 Clacu-Chr1:32105999 Clacu05g2058 Clacu-Chr5:29510734 2.00E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g960 Blo01g01567 Blo12g00905 Bda01g00525 Bda03g00263 Bpe02g00385 Bpe04g00217 Bma04g00212 . . . Cma01g01916 Cma09g00148 Car01g01497 . . Cpe06g00104 . . . . . . . . . . . . . . . Cone4ag1918 Cone7ag1830 . . Lsi04g01686 Csa03g04225 Chy04g00489 . . . . . . . . . . Cmo01g01979 Cmo09g00146 . . . Car09g00133 . Cpe02g00120 . . . . . . . Cla05g01926 Cam05g2064 Cec05g2076 Cco05g2127 Clacu05g2058 Cmu05g1935 Cre05g2058 . . . Cme04g00548
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.8e-178 620.5
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT1G76900 68.6 1.7e-168 589.3
Clacu05g0667 . 13 387 TUB Transcription Factor Family AT1G76900 50.7 3.2e-111 399.1
Clacu05g1148 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Clacu08g0497 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.7e-94 341.3
Clacu08g0848 . 175 432 TUB Transcription Factor Family AT1G25280 70.0 2.0e-92 335.9
Clacu05g0667 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.7e-70 261.5
Clacu05g2058 . 309 536 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Clacu01g2022 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.1e-63 240.4
Clacu06g0531 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Clacu05g0667 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Clacu06g0531 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Clacu08g0497 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.8e-84 308.5
Clacu08g0848 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Clacu05g1148 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Clacu05g2058 . 245 536 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Clacu01g2022 . 1 413 TUB Transcription Factor Family AT2G18280 61.3 1.6e-138 489.6
Clacu05g2058 . 131 536 TUB Transcription Factor Family AT2G18280 59.0 4.4e-125 444.9
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.6e-119 425.2
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 8.4e-116 414.1
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Clacu06g0531 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 6.5e-100 361.3
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT2G47900 68.7 1.5e-160 562.8
Clacu06g0531 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.1e-146 515.8
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 2.5e-131 465.7
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.6e-131 463.8
Clacu05g2058 . 140 536 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Clacu01g2022 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 2.8e-114 409.1
Clacu07g1025 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.3e-100 362.8
Clacu09g0346 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 8.5e-73 270.8
Clacu08g0497 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Clacu05g1148 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Clacu08g0848 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 3.1e-141 498.4
Clacu05g0667 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.8e-105 379.0
Clacu05g2058 . 198 536 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Clacu06g0531 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.4e-93 339.3
Clacu05g2058 . 164 536 TUB Transcription Factor Family AT1G47270 64.4 1.0e-134 476.9
Clacu01g2022 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 2.9e-121 432.2
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Clacu08g0497 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Clacu08g0848 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 5.6e-112 401.4
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Clacu07g1025 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.2e-152 533.5
Clacu05g0667 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.9e-97 351.3
Clacu05g1148 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.5e-82 301.6
Clacu06g0531 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.5e-82 301.6
Clacu08g0848 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 6.4e-81 297.7
Clacu08g0497 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Clacu05g2058 . 249 536 TUB Transcription Factor Family AT3G06380 52.9 3.5e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005909 3 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47739 PF01167 Tub 3.00E-105 CL0395 Clacu TF