Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2084 ATGTGCTGCAGCGTTCCCATTCCTAAATATATGAAGCACCTCAGATTGAGCAAAGCCAACCCCAAGTCTTCGAATTTCCTCCAGACACCACAGCCTCCACCATGGACTGATTCAAATTACGAATTAATGAAGCACTGCCAAGACCCCAACACACAGCACACCAAAACGCTAACTCCTAATCAGTATTGGAAGGCTGTCCAGGAGATAGGAACTTTGTTTGACTTTTGCTGTAGTTTGTTCAAGAGTGCGACACGTGGCGTGTCCTTGGCCGTTGGTTCATTCCACTTTTTGCTTTCCGAGCGTGCACCGGCGGTGGCGATAGCAAGAAGAATATCCAGCACTTGTTCCACAATGCCAGGAAGAAGCGTGGAAGACGATCTTGATTCCAATTCTGCACTATTGACTTGTTTAAACCCTAATTATTTGGAATCTGCTGGCGATTTTTTACTCCGGCTCCATCTTCCAGCAACTCTAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGAGAACAATCCAGAGCAGATCACGTCGAAGGTCAATGAGCTAAAGGCTAAGTTAGGATCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCCAGGAATTGGAATGTAGACAAAGCAAAGAAAATGCTGGAAGAGACATTCAAATGGAGATCTATGTATAAGCCTGAGGAAATTCGTTGGCCCGAAATAGCACTTGAAAGTGAGACTGGAAAACTTTATCGAGCAAGTTTTCACGACCGAGAAGGAAGAAGCGTTCTTATAATGAAGCCAGGAAAGCAGAACACGGCATCGATAGAAAATCAGATCCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCTGAAGGTCAGGAGCAGATGTCATGGCTAATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTGCCAATCAAATCTGCACGGGAGACCGTCAACATCTTGCAGAACCACTACCCCGAGAGACTAGCCCTTGCGTTTCTATATAATCCCCCAAGGATATTTGAAACGTTCTGGAAGGTAGTCAAGTACCTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTATCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCGTCAGAGTTTGGAGGAAAAGCCCAACTGGAATATGTCCATGAGGAGTACTCTAGGTTAATGATTCAAGATGATATTAAATGTGCTGCCTTCTGGGAACATGGTGAAAAGCAACACCATATTGTCAATGGCTACTCCAGTGCAGTGGTGGCTCCAGAGTGA 1335 44.12 MCCSVPIPKYMKHLRLSKANPKSSNFLQTPQPPPWTDSNYELMKHCQDPNTQHTKTLTPNQYWKAVQEIGTLFDFCCSLFKSATRGVSLAVGSFHFLLSERAPAVAIARRISSTCSTMPGRSVEDDLDSNSALLTCLNPNYLESAGDFLLRLHLPATLMFGRWSTSHHEEENNPEQITSKVNELKAKLGSLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPEEIRWPEIALESETGKLYRASFHDREGRSVLIMKPGKQNTASIENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFETFWKVVKYLLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDIKCAAFWEHGEKQHHIVNGYSSAVVAPE 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29672598 29676337 - ClG42_05g0208400.10 Clacu05g2084 249831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2084 444 FunFam Phosphatidylinositol transfer protein 3 161 432 - -
Clacu05g2084 444 SUPERFAMILY CRAL/TRIO domain 239 415 IPR036865 -
Clacu05g2084 444 CDD SEC14 257 398 IPR001251 -
Clacu05g2084 444 SUPERFAMILY CRAL/TRIO N-terminal domain 168 241 IPR036273 -
Clacu05g2084 444 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 239 403 IPR001251 -
Clacu05g2084 444 PANTHER GH16843P 166 428 IPR052578 GO:0008526(PANTHER)
Clacu05g2084 444 SMART sec14_4 245 400 IPR001251 -
Clacu05g2084 444 Pfam CRAL/TRIO domain 248 397 IPR001251 -
Clacu05g2084 444 Pfam CRAL/TRIO, N-terminal domain 200 224 IPR011074 -
Clacu05g2084 444 SMART CRAL_TRIO_N_2 200 225 IPR011074 -
Clacu05g2084 444 Gene3D - 161 432 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2084 K26544 - - csv:101203752 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2084 Clacu-Chr5:29672598 Clacu07g0921 Clacu-Chr7:23093196 6.10E-107 dispersed
Clacu04g0521 Clacu-Chr4:18392132 Clacu05g2084 Clacu-Chr5:29672598 4.00E-71 transposed
Clacu11g1715 Clacu-Chr11:28402752 Clacu05g2084 Clacu-Chr5:29672598 1.60E-70 transposed
Clacu01g2012 Clacu-Chr1:32020670 Clacu05g2084 Clacu-Chr5:29672598 1.20E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82