Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g2133 | ATGAACACACCATCTTCCTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCGATGTCCATGATGTTGACACCGCCGTGTGAGACGAAGGCCAAGCCACGGAGCTCAACCACCACGGATTCGAGTTGTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGTTTAGGGTTTGAAGTGGGAGATATGGATGTTCTTCCTCGCCGGCGTCATCATAATGTCCGTGGCCGCCGCGACTTCAAAAGAAGCGGTGGTGGTGTCGGGTGTGGAGTAAGAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACAACTCTACATGCTCATTTTGTACATGCTGTTCAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGATCTAACCCTAGCTCACGTCAAAAGCCATTTACAGATGTACAGAACAGTGAAGAATACTGTGAAGGTAACAGATGATTGTGGAAGGACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTCAAAAATCTAACTTTCAATCACCTCCTTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACAGGACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATGAAGGTTGAAGGAAGCAATGGAGATTATCACGAGGCAATCACCATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGATGCAAAAGAGCTTGCCCTTCTCAATTGCTAA | 798 | 44.86 | MNTPSSLPDLSLQISLPMSMMLTPPCETKAKPRSSTTTDSSCSGKSDLSHENGLFRLGFEVGDMDVLPRRRHHNVRGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKVTDDCGRTEIEEDAIVLSSSVQKSNFQSPPLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKVEGSNGDYHEAITMQRINLEFTLGRPSWQLDYGDAKELALLNC | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30060234 | 30063517 | - | ClG42_05g0213300.10 | Clacu05g2133 | 249880 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g2133 | 265 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 99 | 152 | IPR006447 | GO:0003677(InterPro) | |
Clacu05g2133 | 265 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 3 | 252 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) | |
Clacu05g2133 | 265 | FunFam | Myb family transcription factor | 97 | 155 | - | - | |
Clacu05g2133 | 265 | SUPERFAMILY | Homeodomain-like | 96 | 153 | IPR009057 | - | |
Clacu05g2133 | 265 | MobiDBLite | consensus disorder prediction | 29 | 47 | - | - | |
Clacu05g2133 | 265 | Pfam | Myb-like DNA-binding domain | 100 | 151 | IPR001005 | - | |
Clacu05g2133 | 265 | Gene3D | - | 98 | 155 | - | - | |
Clacu05g2133 | 265 | MobiDBLite | consensus disorder prediction | 22 | 47 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2133 | Clacu-Chr5:30060234 | Clacu09g1167 | Clacu-Chr9:11281499 | 3.60E-30 | dispersed | |
Clacu01g2458 | Clacu-Chr1:35049908 | Clacu05g2133 | Clacu-Chr5:30060234 | 1.90E-18 | transposed | |
Clacu11g1835 | Clacu-Chr11:29499845 | Clacu05g2133 | Clacu-Chr5:30060234 | 2.80E-15 | transposed | |
Clacu02g1827 | Clacu-Chr2:31765013 | Clacu05g2133 | Clacu-Chr5:30060234 | 2.70E-16 | transposed | |
Clacu05g2133 | Clacu-Chr5:30060234 | Clacu08g1709 | Clacu-Chr8:26638243 | 5.80E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47740 | PF00249 | Myb_DNA-binding | 1.00E-05 | CL0123 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g2133 | - | - | - | 0.0 |