Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2133 ATGAACACACCATCTTCCTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCGATGTCCATGATGTTGACACCGCCGTGTGAGACGAAGGCCAAGCCACGGAGCTCAACCACCACGGATTCGAGTTGTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGTTTAGGGTTTGAAGTGGGAGATATGGATGTTCTTCCTCGCCGGCGTCATCATAATGTCCGTGGCCGCCGCGACTTCAAAAGAAGCGGTGGTGGTGTCGGGTGTGGAGTAAGAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACAACTCTACATGCTCATTTTGTACATGCTGTTCAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGATCTAACCCTAGCTCACGTCAAAAGCCATTTACAGATGTACAGAACAGTGAAGAATACTGTGAAGGTAACAGATGATTGTGGAAGGACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTCAAAAATCTAACTTTCAATCACCTCCTTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACAGGACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATGAAGGTTGAAGGAAGCAATGGAGATTATCACGAGGCAATCACCATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGATGCAAAAGAGCTTGCCCTTCTCAATTGCTAA 798 44.86 MNTPSSLPDLSLQISLPMSMMLTPPCETKAKPRSSTTTDSSCSGKSDLSHENGLFRLGFEVGDMDVLPRRRHHNVRGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKVTDDCGRTEIEEDAIVLSSSVQKSNFQSPPLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKVEGSNGDYHEAITMQRINLEFTLGRPSWQLDYGDAKELALLNC 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30060234 30063517 - ClG42_05g0213300.10 Clacu05g2133 249880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2133 265 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 152 IPR006447 GO:0003677(InterPro)
Clacu05g2133 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 252 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Clacu05g2133 265 FunFam Myb family transcription factor 97 155 - -
Clacu05g2133 265 SUPERFAMILY Homeodomain-like 96 153 IPR009057 -
Clacu05g2133 265 MobiDBLite consensus disorder prediction 29 47 - -
Clacu05g2133 265 Pfam Myb-like DNA-binding domain 100 151 IPR001005 -
Clacu05g2133 265 Gene3D - 98 155 - -
Clacu05g2133 265 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2133 Clacu-Chr5:30060234 Clacu09g1167 Clacu-Chr9:11281499 3.60E-30 dispersed
Clacu01g2458 Clacu-Chr1:35049908 Clacu05g2133 Clacu-Chr5:30060234 1.90E-18 transposed
Clacu11g1835 Clacu-Chr11:29499845 Clacu05g2133 Clacu-Chr5:30060234 2.80E-15 transposed
Clacu02g1827 Clacu-Chr2:31765013 Clacu05g2133 Clacu-Chr5:30060234 2.70E-16 transposed
Clacu05g2133 Clacu-Chr5:30060234 Clacu08g1709 Clacu-Chr8:26638243 5.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47740 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2133 - - - 0.0