Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2138 ATGGTGAAAACAGCAACCAAAAACGAAAAACTCAACAAACTGGGGACCATTCCAATGGGGATCGGCTATATTCGGAAAACAACCATCGGCCACGGCGAAAAAGCCTCTCGAGCACCGAACCGACCAACCCCAGTCCGGTATAAAACCCCGCCGGAGTCCCCATTCATCTTCATCCCTTCCAAACAGCCCTTGGGCGTATCCAAGGTTACTAAGACATTTTCCAGCCCCAGGCTCCGACGGGCTTTCATTGCTCTTCAAGCCTGGAAGCTTGCTATTTATTCAGACCCTTTAAACACCACCGCCGATTGGGTCTGCGCCGATGTCCGCTCCTACACCAGAGTTTTCTGCTCCCCTGCTCTCGACGATCCCAAACTCGAAGTCGTCGTCGGAATTGACCTTAACCATGCTGACATCGCCGGTTACTTGCCCGTCGAGCTCAATTTGCTGACCGACATTGCTCTATTTCACATCAACAACAACAGATTCTGCAGCATTGTCCCATCGAGCTTCTCCAAGCTTACTCTACTCCACGAGCTTGACATTAGCAACAACAGATTTGTAGGGCATTTCCCTAGAGTGGTTGTGAGAATCCCTAATTTGAAATATATGGACATCAAATACAATGATTTCGAAGTCAAATTGCCTCCTAAGCTTTTTACTAAGGAACTCGATGTCATTTTCCTAAACAATAATAGATTCACTTCTTACATTCTTGAAAATTTTGGGGAATCGACAGCGTCAGTGATTGTGATTGCCGACAACAATTTTACAGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTAGCGTTATGCAGGATGTCACCGGTCCCAAGATATCGCCCTCCTCCTCCACTTATAGTGCATTCCCCACCACCACTGGTCCACTCTCCCCCCAGTTTCATCATCCCCACCACCAGTTCACTCAGTTTCATCACCCCCACCACCAGTTCCTTCTCCACCACCACAGGGTTTCATCATCCCCACCACCGATTCACTCTCCACCACCATCGGTTTCATCACCCCACCACTAG 1038 47.88 MVKTATKNEKLNKLGTIPMGIGYIRKTTIGHGEKASRAPNRPTPVRYKTPPESPFIFIPSKQPLGVSKVTKTFSSPRLRRAFIALQAWKLAIYSDPLNTTADWVCADVRSYTRVFCSPALDDPKLEVVVGIDLNHADIAGYLPVELNLLTDIALFHINNNRFCSIVPSSFSKLTLLHELDISNNRFVGHFPRVVVRIPNLKYMDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCIIMDISLNLLTSVMQDVTGPKISPSSSTYSAFPTTTGPLSPQFHHPHHQFTQFHHPHHQFLLHHHRVSSSPPPIHSPPPSVSSPHH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30094952 30096522 + ClG42_05g0213800.10 Clacu05g2138 249885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2138 345 Pfam Leucine rich repeat 156 210 IPR001611 GO:0005515(InterPro)
Clacu05g2138 345 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 68 260 IPR051582 -
Clacu05g2138 345 Gene3D Ribonuclease Inhibitor 82 278 IPR032675 -
Clacu05g2138 345 SUPERFAMILY L domain-like 91 272 - -
Clacu05g2138 345 MobiDBLite consensus disorder prediction 330 345 - -
Clacu05g2138 345 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
Clacu05g2138 345 MobiDBLite consensus disorder prediction 321 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2138 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2138 Clacu-Chr5:30094952 Clacu06g0346 Clacu-Chr6:4213982 5.60E-39 dispersed
Clacu05g2138 Clacu-Chr5:30094952 Clacu06g1101 Clacu-Chr6:20726194 1.40E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0563 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.6e-49 193.7
Clacu11g0393 . 73 424 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 6.7e-48 189.5
Clacu07g0234 . 27 374 Leucine-rich Repeat extension Gene Families AT1G62440 56.7 4.5e-44 176.8
Clacu05g2138 . 73 266 Leucine-rich Repeat extension Gene Families AT1G62440 60.8 2.1e-41 167.9
Clacu06g1101 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 7.9e-41 166.0
Clacu11g0393 . 38 424 Leucine-rich Repeat extension Gene Families AT4G13340 75.8 5.8e-73 272.7
Clacu06g1101 . 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.3 1.4e-66 251.5
Clacu05g0563 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.6 5.0e-56 216.5
Clacu05g2138 . 73 260 Leucine-rich Repeat extension Gene Families AT4G13340 67.6 7.4e-44 176.0
Clacu07g0234 . 38 375 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 9.7e-44 175.6
Clacu06g0347 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.4e-39 161.8
Clacu06g0352 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 57.3 1.9e-39 161.4
Clacu06g0351 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 2.5e-39 161.0
Clacu06g0346 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 1.6e-38 158.3
Clacu11g0393 . 38 420 Leucine-rich Repeat extension Gene Families AT3G24480 74.5 1.1e-77 287.7
Clacu06g1101 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 8.4e-73 271.6
Clacu05g0563 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 1.8e-54 210.7
Clacu07g0234 . 45 396 Leucine-rich Repeat extension Gene Families AT3G24480 58.5 2.6e-45 180.3
Clacu05g2138 . 73 260 Leucine-rich Repeat extension Gene Families AT3G24480 66.0 4.4e-45 179.5
Clacu06g0347 . 25 399 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 2.5e-40 163.7
Clacu06g0352 . 34 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.5 2.1e-39 160.6
Clacu05g0563 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.7 6.8e-72 268.5
Clacu07g0234 . 45 374 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 1.9e-50 197.2
Clacu11g0393 . 85 418 Leucine-rich Repeat extension Gene Families AT3G22800 64.0 1.6e-41 167.5
Clacu06g1101 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.4e-38 155.2
Clacu06g1101 . 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 2.8e-40 163.3
Clacu11g0393 . 59 418 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 7.0e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92