Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2138 ATGGTGAAAACAGCAACCAAAAACGAAAAACTCAACAAACTGGGGACCATTCCAATGGGGATCGGCTATATTCGGAAAACAACCATCGGCCACGGCGAAAAAGCCTCTCGAGCACCGAACCGACCAACCCCAGTCCGGTATAAAACCCCGCCGGAGTCCCCATTCATCTTCATCCCTTCCAAACAGCCCTTGGGCGTATCCAAGGTTACTAAGACATTTTCCAGCCCCAGGCTCCGACGGGCTTTCATTGCTCTTCAAGCCTGGAAGCTTGCTATTTATTCAGACCCTTTAAACACCACCGCCGATTGGGTCTGCGCCGATGTCCGCTCCTACACCAGAGTTTTCTGCTCCCCTGCTCTCGACGATCCCAAACTCGAAGTCGTCGTCGGAATTGACCTTAACCATGCTGACATCGCCGGTTACTTGCCCGTCGAGCTCAATTTGCTGACCGACATTGCTCTATTTCACATCAACAACAACAGATTCTGCAGCATTGTCCCATCGAGCTTCTCCAAGCTTACTCTACTCCACGAGCTTGACATTAGCAACAACAGATTTGTAGGGCATTTCCCTAGAGTGGTTGTGAGAATCCCTAATTTGAAATATATGGACATCAAATACAATGATTTCGAAGTCAAATTGCCTCCTAAGCTTTTTACTAAGGAACTCGATGTCATTTTCCTAAACAATAATAGATTCACTTCTTACATTCTTGAAAATTTTGGGGAATCGACAGCGTCAGTGATTGTGATTGCCGACAACAATTTTACAGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTAGCGTTATGCAGGATGTCACCGGTCCCAAGATATCGCCCTCCTCCTCCACTTATAGTGCATTCCCCACCACCACTGGTCCACTCTCCCCCCAGTTTCATCATCCCCACCACCAGTTCACTCAGTTTCATCACCCCCACCACCAGTTCCTTCTCCACCACCACAGGGTTTCATCATCCCCACCACCGATTCACTCTCCACCACCATCGGTTTCATCACCCCACCACTAG 1038 47.88 MVKTATKNEKLNKLGTIPMGIGYIRKTTIGHGEKASRAPNRPTPVRYKTPPESPFIFIPSKQPLGVSKVTKTFSSPRLRRAFIALQAWKLAIYSDPLNTTADWVCADVRSYTRVFCSPALDDPKLEVVVGIDLNHADIAGYLPVELNLLTDIALFHINNNRFCSIVPSSFSKLTLLHELDISNNRFVGHFPRVVVRIPNLKYMDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCIIMDISLNLLTSVMQDVTGPKISPSSSTYSAFPTTTGPLSPQFHHPHHQFTQFHHPHHQFLLHHHRVSSSPPPIHSPPPSVSSPHH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30094952 30096522 + ClG42_05g0213800.10 Clacu05g2138 249885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2138 345 Pfam Leucine rich repeat 156 210 IPR001611 GO:0005515(InterPro)
Clacu05g2138 345 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 68 260 IPR051582 -
Clacu05g2138 345 Gene3D Ribonuclease Inhibitor 82 278 IPR032675 -
Clacu05g2138 345 SUPERFAMILY L domain-like 91 272 - -
Clacu05g2138 345 MobiDBLite consensus disorder prediction 330 345 - -
Clacu05g2138 345 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
Clacu05g2138 345 MobiDBLite consensus disorder prediction 321 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2138 Clacu-Chr5:30094952 Clacu06g0346 Clacu-Chr6:4213982 5.60E-39 dispersed
Clacu05g2138 Clacu-Chr5:30094952 Clacu06g1101 Clacu-Chr6:20726194 1.40E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2138 - - - 0.0