Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2153 ATGCGCATGTCTGAGTTTTATAGGGGCTTTGATGAGGTGCAATCTTCCCAAATGGATGAACCAGAAATGGAAGAAGATGACTTCGCATTTGATATTTGCCAGCAGTTAGAGGCAACCACACTCTCAGCCGACCAGCTATTTGATGATGGTAAAATCCGACCACTAGAGACACCACCACAATCACCAATATCTCAACAAAATAAAATCTTTCAGAATGCGTACACTACTGAAAGGAGGAAAGATCCAACAGAAACGATAAATGAGAACACAGTGAGGAAAAAGGAACAGAAGAGAGGGAGAGGAAGGAAACCAGCCTCGTCGTCCTCAGCTTCCAGAAGAGCAGTGAGGTCGCTCTCTCCCAATAGAGTTTCTTCACAAAACAACGAAGGACAGCTGAGGTCGACTCCAGGATCTCCTTCTGCTACTGGTACCAATTCCAATACCACCTCATCTAAGGGTAGTAGACGATGGAGACTAAAGGATCTGTTCCGGAGTGCATCTGAAGGACGAGGAACTGGAAAGGATCCTCTAAGGAAATATTCAACCGTATACAAGAAGCAAGAAGAGTTTAAGAATACGAGCTTCAAATCTAACAATAGCAGAAATGGGCCAGTTTCAATCTATGAGCCACATTTTTCATTGAATAGAGGAGCATCAGAGGACAAGAAGAAGACTTTCCTGCCCTACAAGGGGATTTTGGGAGGACTCCTCTTCAATCCAGCAGCTCATATGCATACCAACTTTAGGTCCTCTCGCTGA 759 44.4 MRMSEFYRGFDEVQSSQMDEPEMEEDDFAFDICQQLEATTLSADQLFDDGKIRPLETPPQSPISQQNKIFQNAYTTERRKDPTETINENTVRKKEQKRGRGRKPASSSSASRRAVRSLSPNRVSSQNNEGQLRSTPGSPSATGTNSNTTSSKGSRRWRLKDLFRSASEGRGTGKDPLRKYSTVYKKQEEFKNTSFKSNNSRNGPVSIYEPHFSLNRGASEDKKKTFLPYKGILGGLLFNPAAHMHTNFRSSR 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30218155 30218913 - ClG42_05g0215300.10 Clacu05g2153 249900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2153 252 PANTHER OS07G0619500 PROTEIN 18 240 - -
Clacu05g2153 252 Pfam Protein of unknown function (DUF1645) 43 228 IPR012442 -
Clacu05g2153 252 MobiDBLite consensus disorder prediction 103 153 - -
Clacu05g2153 252 MobiDBLite consensus disorder prediction 45 177 - -
Clacu05g2153 252 MobiDBLite consensus disorder prediction 74 95 - -
Clacu05g2153 252 MobiDBLite consensus disorder prediction 58 73 - -
Clacu05g2153 252 MobiDBLite consensus disorder prediction 1 23 - -
Clacu05g2153 252 MobiDBLite consensus disorder prediction 154 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2153 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2153 Clacu-Chr5:30218155 Clacu02g0617 Clacu-Chr2:6081644 1.60E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g818 . . . . . . . . . . Cma01g01864 . Car01g01451 . . . . . . . . . . . . . . . . . . . Cone7ag1394 . . . Csa04g02383 . . . . . . . Bpe05g00360 . . Sed01g2643 Cmo01g01921 . . . . . . Cpe02g00163 Bhi09g03360 Tan01g4826 Cmetu07g0696 . Hepe01g1738 Mch11g0264 . Cla05g02009 Cam05g2161 Cec05g2177 Cco05g2225 Clacu05g2153 Cmu05g2021 Cre05g2149 . . Chy07g00110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013350 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 27