Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2165 ATGCCACCACCTGTGACCATCGTACCACAGGCACACCATCGTGGTCCTCCATCAAAGAAGCAGCCGCCAGCTGGACTTAGGTTTGCCGTTGAGGTAAAAGCCGAATTCTTAACCATCCACATTAATTCACAATTAGAGGTGGAACAGGTCGTAGGAGGATTCAACGCAAAAGATGATGTAATGTTTAAGGAATTGGGAATTGGATATCCTCAAGTTTTGGATTACGAAATTATGCTCCGTGCTTGGGCAAGAAGTCGGCGTTCTCATCGTTTAATTCATCTTCGTCGTTTCTCATCGTCGTCTTCATCTTCTTCCTCATCTTCTACTGCACAAAAATCAACCGAGGGATCGAACAATCTCCAGAATTCGCATTTAGTCTCACCCCCGACTCCGATTTTGCACCGCCCACAGAACAGTTTGTTGCCCAGTGCATCGCCCGCTTCTTTTTCTCGCAGTTCGATTATAACTGCCTCCGCTGCTGTTGTTTCTGCTTTAGTCGCTTCTATTGCTCTTCTTACCTCTGACAGTCGGTCTGATCACCCCGGGGAGAGTTATAATCCCTTGTATGATGGGATTGAAGGGGCGGCTCAGAGATCTAGCGATTCATTTAAGAAGATTTTTCATCACATTAAACAAACTGGCGTGGCCGCCTCGGTTCTCTGGCAGTCGTTAAGGTCGGTGATGTCGTCGGCCAATCATGAGGTCCGGTCCGGTTTTGAACTCAGGGTAGCGGCATTGCTGGCCGATATTGCTGCAGCCAATGCCAGCCGCAGGGCAGCGATTGTCGGGGCCGGAGACGGTGCTGTGGTGGACTGGTTGCTCGAGTCGGTGGCGGTTCCTCGGGATGGATGTGGAACTCAGGCAGAGTCCGCCAGAGCGCTGGCCTACTTGATTGCTGATCCTGACGTCTCTGCTTCCGTCCTTGGGAGGCCTCGTGCTGTGCCAAATCTTTTGAGATTCATCTTCTCGTGTCAGCCTCGGCGAACGAAGCAGCATCCAAGACGTAGTTCATTCGATATTTCTGATTCTTTGAAAGGTAGGAGCATGCTTGTGGCTGCCATCATGGATATTGTAACGTCCAATTGTGATAGGTTAGAGAAGCTGGCTTTTGAGCCATCATTGCCTGCACATGCCGAAACTAGAGATATTGCAGCAGCTATTCAAGTTATTGAGGAAGGTGGTTTGGAATTTGATGAACCAAATGGCGGTGAAGATGAAGATGGTGGAAGAGGACTCAAAGGAATAGGAATTAAGATTCTTGGAGGCACTACTGTTTTGGGACTTTCGAGAATAAGTGGGTTTGTGAAGTTGGCGTATTCTGATGCTGGTCATGTAGAACTGGTAAAAAATACACCTAAAAGTTCAGTATCAGAAAAGCATGATAGCTCACTCGTAGCTAATTCTTCTGTTGTTCCTGGTCTGTGGGATGATTTGCATTGTGAGCATGTTGCTGTACCTTTTGCCGCTTGGGCGTTGGCAAATTGGTCAATGGCATCAGAACTGAATAGATTGCACATCCATGAACTAGATCAAGATGGACATGCTGTTATGACTGCTTTAATGGCACCTGAAAGGTCAGTGAAATGGCATGGAAGTTTGGTAGCTAGGCTTTTACTAGAGGACCGTAATCTCCCCTTAAATGATTATGTTTCTGATTGGAGCTCAAGCCTTCTTTCTACTGTTTCTCATGCAAGTAAAAATGATGACATCCCTTTGGCTCAGGCTGCTTTGTCTGCTTTTTTGGCTTCTGTTGAACGGTTCCCTGAGGCACAAAAGAAAATAATGGAGAGGGGTCTGCATCTAATGAGAGATGCTGCTATACGGACCCAAAAACATGGAGAGGTTCAAGAAGCATTAGCAAAGGCATTAGAGTTACTCAGCACTGGATGGATGCATCTATCAGCTGAAGAGAGTCAGAGATGGTCTGCTATACTACTTCAATGGGTCTTTGGCAAATTTTCCTCTGAATCTTTGAGGTCTTCTGCAACTAAAATTTTATCTTGCATTCTTGAAGACTACGGACCAAGCTCCATACCTATTTCTCAAGGATGGCTGGCTATACTGCTGACTGAAATACTAGGTTCTACTAAGAAGCCTGCAGTGAATGGAGCTATGCAGCTTAAAAATGACAAAGTGAAGACTAAGATTGAGCAGTCGAACATTGTTTTTGCCAGTCAAGTTGCTAGTCAGTTAGCAGGTGCTGTTGTTAACCTGGCGGTACACCAGTTTGGTGCAACTACTGATTCATTAGATACCTCTCCGTTGGCAGATTTACTTTCATGTGAACCTTTTGTAGCACCTTTAAAGAATATAAAAAAAGAGAATAGTCCAAAGTTTGATGCAGCTGATTCTGCAATGGCAACGTTAAAGGGGATTAAAGCACTGACTGAAGTTTGTGCAGATGATTCTTCATGTCAGAGCAGAATAGCTGATTTTGGCATTCTCTTTTTGCTGAGACGCCTTTTGTTATGCGATGATTATGAGAAGCTGGCAGCCATGGAAGCATATGATGCATCTAGAGCTCTTGAGGCTCAGGAACGTGTTTCAAATGCATCTGGGGAACCATCACTTTCAGAGAAGAAGAATGACTCATCTAGTGTCCGAGTACCCCCCACGGCTCACATCCGTAGGCATGCTGCTCGGCTTTTAACCATCCTCTCACTTCTAGAGAAAGTCCAGAAGGAGATTCTCTCTGATGAAGAATTTTGTAGATGGCTCGAGGACTGTGCCAATGGGGCCATTCCTGGTTGCCATGATGCTAAATTGCAAAGTTATGCTAGAGCCACACTGTTAAATATATTTTGTATTAACCATAGAGCTTCTGAAAATGCTTCTACCTCTGATACTGAGTCTACAAACAGGAAGAAGAATTGCCCCCGTTATGATGATATGATTTTTTTAATAAATCCCGAACTTCCTCACTGGAAGGTTCATGAAGAAAAGGTGCAGGACACTGTTCAAAAGGATGAATCTTCTCTTTCACAGGCTAATTTCATTGATATTGATGGTGTAGCTGTGGCAAGGCATGGAAATGATGATAATTCTTCATCTCATGAGAATGATTCTAGGCAAGACTCTCCCTTGGTAGATGTGGTTTTCATTCATGGCCTCCGAGGTGGACCTTACAAGTCCTGGCGCATATCTGAGGACAAATCCTCAACAAAATCTGGACTGGTAGAGAAGATTGATCAGGAGGCAGGGAAACTAGGGACGTTTTGGCCGGGTGAATGGCTTTCATCCGACTTCCCAAGGGCTCGTATGTTTACCCTTAAATACAAGACAAATCTCACTCAGTGGTCTGGGGCTAGCCTTCCTCTTCAGGAAGTCAGCTCCATGCTACTGGATAAGCTTGTTGCTGCTGGAATTGGGGATCGACCTGTTGTATTTGTTACTCACAGCATGGGAGGGCTAGTTGTCAAGCAAATGTTGTATAAAGCCCAGACAGAAAATATTGATAAACTTGTGAAGAATACTGTGGGAGTTGTCTTCTATAGCTGCCCACATTTTGGAAGCAAACTAGCAGACATGCCTTGGCGAATGGGTCTTGTATTCCGCCCTGCCCCTACTATAGGAGAGCTGAGGAGTGGGTCTCCTAGATTGGTGGAGCTGAATGATTTTCTCCGTCACCTCCATAAGAAAGGACTACTTGAGGTCCTTAGTTTCTGTGAGACGAAGGTGACCCCAATTGTTGAAGGTTATGGAGGATGGGCTTTCCGAGTGGAAATTGTTCCTATTGAATCTGCATATCCTGGCTTTGGCGAACTAGTTGTTTTAGAATCAACGGATCACATAAATTCGTGTAAGCCCCTCAGCCGCACTGACCCTTCATACACCGAGACATTGGAATTTTTGCAGAAGTTGAAATCTCGCTATGCTTAG 3879 45.22 MPPPVTIVPQAHHRGPPSKKQPPAGLRFAVEVKAEFLTIHINSQLEVEQVVGGFNAKDDVMFKELGIGYPQVLDYEIMLRAWARSRRSHRLIHLRRFSSSSSSSSSSSTAQKSTEGSNNLQNSHLVSPPTPILHRPQNSLLPSASPASFSRSSIITASAAVVSALVASIALLTSDSRSDHPGESYNPLYDGIEGAAQRSSDSFKKIFHHIKQTGVAASVLWQSLRSVMSSANHEVRSGFELRVAALLADIAAANASRRAAIVGAGDGAVVDWLLESVAVPRDGCGTQAESARALAYLIADPDVSASVLGRPRAVPNLLRFIFSCQPRRTKQHPRRSSFDISDSLKGRSMLVAAIMDIVTSNCDRLEKLAFEPSLPAHAETRDIAAAIQVIEEGGLEFDEPNGGEDEDGGRGLKGIGIKILGGTTVLGLSRISGFVKLAYSDAGHVELVKNTPKSSVSEKHDSSLVANSSVVPGLWDDLHCEHVAVPFAAWALANWSMASELNRLHIHELDQDGHAVMTALMAPERSVKWHGSLVARLLLEDRNLPLNDYVSDWSSSLLSTVSHASKNDDIPLAQAALSAFLASVERFPEAQKKIMERGLHLMRDAAIRTQKHGEVQEALAKALELLSTGWMHLSAEESQRWSAILLQWVFGKFSSESLRSSATKILSCILEDYGPSSIPISQGWLAILLTEILGSTKKPAVNGAMQLKNDKVKTKIEQSNIVFASQVASQLAGAVVNLAVHQFGATTDSLDTSPLADLLSCEPFVAPLKNIKKENSPKFDAADSAMATLKGIKALTEVCADDSSCQSRIADFGILFLLRRLLLCDDYEKLAAMEAYDASRALEAQERVSNASGEPSLSEKKNDSSSVRVPPTAHIRRHAARLLTILSLLEKVQKEILSDEEFCRWLEDCANGAIPGCHDAKLQSYARATLLNIFCINHRASENASTSDTESTNRKKNCPRYDDMIFLINPELPHWKVHEEKVQDTVQKDESSLSQANFIDIDGVAVARHGNDDNSSSHENDSRQDSPLVDVVFIHGLRGGPYKSWRISEDKSSTKSGLVEKIDQEAGKLGTFWPGEWLSSDFPRARMFTLKYKTNLTQWSGASLPLQEVSSMLLDKLVAAGIGDRPVVFVTHSMGGLVVKQMLYKAQTENIDKLVKNTVGVVFYSCPHFGSKLADMPWRMGLVFRPAPTIGELRSGSPRLVELNDFLRHLHKKGLLEVLSFCETKVTPIVEGYGGWAFRVEIVPIESAYPGFGELVVLESTDHINSCKPLSRTDPSYTETLEFLQKLKSRYA 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30313708 30326792 - ClG42_05g0216500.10 Clacu05g2165 249912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2165 1292 MobiDBLite consensus disorder prediction 847 869 - -
Clacu05g2165 1292 MobiDBLite consensus disorder prediction 847 870 - -
Clacu05g2165 1292 SUPERFAMILY alpha/beta-Hydrolases 1026 1287 IPR029058 -
Clacu05g2165 1292 Gene3D alpha/beta hydrolase 1030 1215 IPR029058 -
Clacu05g2165 1292 MobiDBLite consensus disorder prediction 99 138 - -
Clacu05g2165 1292 SUPERFAMILY ARM repeat 486 909 IPR016024 -
Clacu05g2165 1292 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 78 1291 - -
Clacu05g2165 1292 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2165 K23504 - - csv:101222471 2071.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0591 Clacu-Chr4:19194502 Clacu05g2165 Clacu-Chr5:30313708 2.50E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g809 . Blo12g00948 . Bda03g00222 . Bpe04g00189 Bma04g00176 . . . . Cma09g00214 . . . Cpe06g00149 . . . . . . . . . . . . . . . . . . Cone20ag0175 Lsi04g01580 Csa04g02389 . . . . . . . . . . . . Cmo09g00207 . . . Car09g00182 . . Bhi09g03347 . . . . . . Cla05g02022 Cam05g2172 Cec05g2188 Cco05g2236 Clacu05g2165 Cmu05g2033 Cre05g2161 . . Chy07g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005432 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 1 39