Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2170 ATGTGGGGATTTGGAGGAAGGTATTACTGGGGAAGAAGAGAGCGACTCGAGAAAGTCGAAGGGATTGTTGTGGCGTTCGCATGGATGTCTAGTCAGGAGCGGCACTTGAAACGATATGTGGACATGTATTCCTCTCTGGGTTGGAATTCACTCGTTTGCCATTCTGAATTCCTCAATATGTTCTTCCCCGATAAGGCTGCATCTCTGGCATTTGACATTCTTAAAGTACTAGTCGAGGAGCTAAACATTAAGAGATGCCCTGTAGTATTTGCATCATTTTCTGGTGGGCCAAAAGCATGCATGTATAAGGTTCTCCAGATAATTGAGGGATACCATGAACCGCAACAACATAGTTCGGATGATTATCAACTGGTCAGGGACTGTCTTGCTGGCTATATTTATGATTCCAGTCCAGTTGATTTTACCAGTGACTTGGGAACTCGATTTATTCTTCATCCAACTGTGATGAAAGCATCCCAACCACCAAGAATAGTATCATGGGCAGCACATAACATTGCTTCTGGTCTTGACGCACTCTTCCTCAACAGATTTGAATCACACCGTGCAGAATATTGGCAAACTCTTTATGCCTCAGTTAGTATGAAAGCTCCTTATCTTATTTTGTGCTCGGAAGAGGATGATCTTGCTCCCTATCAGACAATCTTCAATTTTGCTCAACGACTAGAAGATCTTGGGGGAGATGTTAAATTAATGAAATGGAATGGCTCCCCACATGTAGGGCATTATCTGCATTTTCCCAATGAATATAGAGCTGCTGTCACAGAGTTGCTAGGTAAGGCCGCTGGAGTTTACTGTCAAAGAACTAGACCTGATGAAGGAGTAACTGCCGTAGATAAAATGAAAGGCGACTCTTGCAATACAACACCTGAAGTTAGAAAAGCTGCATCTCCATCAAGTAGCTTTCAGGAGCCTGCTATAGCTCCAAATGACCATCTTCTCTTCTCGAGCACGATGGATGGATTTGACTACAGGGTCATAGGATCCATGCGAGATGAACACATGGACGGAGTAATGCAGCTATCTAATTCACCAAGTACCATTCCTCATGGAGTTCTCGGTCAAATCCTTTACGATGTTTCTGTTCCGAAGAACGTTGAGGATTGGGACATTGGATCATCAAGTTCTTCAAATGGTGTCTTGCGTGAGCACACAAGACGGCATACTTCCTTCAATCCCATCAAACTGATGCGTCGCTCAAGACTAGACAAGGAATTTACTGGTTTGTTGAAAACTTTGGCTATTGGGAAACTATGGAGCAAGCAAAAATGTAAAATCTTCGGCAAGTTCGGTCACTTTGCCTTCGTTGAAAGTATGAAGGTTCTTGTAACTGGAGCGTCTGGGTATCTGGGCGGAAGGCTATGCCGTGCATTATTGAACCGAGGCTTCTCCGTTCGGGCTTTGGTCCGTCCGACCAGCGACCTTTCTGCTCTTCCTCATGATCCTTCTGCTCTTGAGCTCGTTCATGGCGATATCACCGACTACCAGTCGCTTCTAGAGGCATGCTCGGGCTGCCATGTCGTCTTCCACGCGGCCGCAATGGTCGAGCCATGGCTTCCTGATCCATCGAAATTCATCTCTGTTAATGTACGAGGGTTGGAGAACGTGTTGCAAGCGGTTAGAGAGACGAAAACAATCGAGAAGATTATATATACGTCGTCCTTTTTCGCGCTTGGCTCAACCGATGGGTATGTTGCCGATGAAAAACAGGTCCATCACGAGAAATTCTTTTGTACAGAGTACGAGAAATCGAAGGCCATTGCTGACAAGATTGCTTTGCGAGCTGCATCTGAGGGCATTCCGATAGTGCCGGTTTATCCCGGAGTTGTCTATGGCGCTGGGAAAGTCACGGCTGGGAATGTTATTGCCCGCATGCTGATTGAACGGTTCAATGGGCGATTACCCGGATATTTAGGCCATGGAAACGATAGGTATTCTTTTAGCCATGTCGATGATGTGGTAGAAGGGCATATTGCAGCAATGCAGAAAGGTCGAGTAGGGGAAAGGTATCTTCTAACAGGAGAAAATGCATCATTTGTGGAAGTTTTTGACACAGCTGCAGCCATTACTGGTACAACAAAACCAATCTTTAACATTCCACTGTGGTTAATTGAAACCTGTGGCTGGGTTTCAGTTTTGATCTCTCGAATCACAGGGAAACTTCCTCTCATCAGCCCCCCGACTGTGAAGGTTTTGAGACATCAGTGGGCATATTCTTGTGACAAGGCAAAACAAGAGCTGGACTATAACCCTAGAAGTTTAAAAGAAGGATTAGAAGAGATGCTACCATGGCTAAAGAGCTTGGGTTTGATAAAATATTAA 2340 45.0 MWGFGGRYYWGRRERLEKVEGIVVAFAWMSSQERHLKRYVDMYSSLGWNSLVCHSEFLNMFFPDKAASLAFDILKVLVEELNIKRCPVVFASFSGGPKACMYKVLQIIEGYHEPQQHSSDDYQLVRDCLAGYIYDSSPVDFTSDLGTRFILHPTVMKASQPPRIVSWAAHNIASGLDALFLNRFESHRAEYWQTLYASVSMKAPYLILCSEEDDLAPYQTIFNFAQRLEDLGGDVKLMKWNGSPHVGHYLHFPNEYRAAVTELLGKAAGVYCQRTRPDEGVTAVDKMKGDSCNTTPEVRKAASPSSSFQEPAIAPNDHLLFSSTMDGFDYRVIGSMRDEHMDGVMQLSNSPSTIPHGVLGQILYDVSVPKNVEDWDIGSSSSSNGVLREHTRRHTSFNPIKLMRRSRLDKEFTGLLKTLAIGKLWSKQKCKIFGKFGHFAFVESMKVLVTGASGYLGGRLCRALLNRGFSVRALVRPTSDLSALPHDPSALELVHGDITDYQSLLEACSGCHVVFHAAAMVEPWLPDPSKFISVNVRGLENVLQAVRETKTIEKIIYTSSFFALGSTDGYVADEKQVHHEKFFCTEYEKSKAIADKIALRAASEGIPIVPVYPGVVYGAGKVTAGNVIARMLIERFNGRLPGYLGHGNDRYSFSHVDDVVEGHIAAMQKGRVGERYLLTGENASFVEVFDTAAAITGTTKPIFNIPLWLIETCGWVSVLISRITGKLPLISPPTVKVLRHQWAYSCDKAKQELDYNPRSLKEGLEEMLPWLKSLGLIKY 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30350506 30356473 + ClG42_05g0217000.10 Clacu05g2170 249917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2170 779 Gene3D alpha/beta hydrolase 110 265 IPR029058 -
Clacu05g2170 779 PANTHER UNCHARACTERIZED 1 273 IPR008547 -
Clacu05g2170 779 SUPERFAMILY alpha/beta-Hydrolases 126 266 IPR029058 -
Clacu05g2170 779 Pfam NAD dependent epimerase/dehydratase family 447 676 IPR001509 -
Clacu05g2170 779 Gene3D - 439 778 - -
Clacu05g2170 779 MobiDBLite consensus disorder prediction 287 309 - -
Clacu05g2170 779 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 441 775 IPR036291 -
Clacu05g2170 779 Pfam Eukaryotic protein of unknown function (DUF829) 22 102 IPR008547 -
Clacu05g2170 779 Pfam Eukaryotic protein of unknown function (DUF829) 129 375 IPR008547 -
Clacu05g2170 779 FunFam NAD(P)-binding Rossmann-fold superfamily protein 444 778 - -
Clacu05g2170 779 CDD AR_FR_like_1_SDR_e 447 771 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2170 K15891 - - csv:101212227 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1151 Clacu-Chr5:10566052 Clacu05g2170 Clacu-Chr5:30350506 3.70E-99 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g783 . . . . . . . . . . Cma01g01851 Cma09g00216 Car01g01444 . . Cpe06g00151 . . . . . . . . . . . . . . . . . Cone17ag0836 Cone20ag0181 Lsi04g01576 Csa04g02394 . . . . . . . . Bma01g00687 . Sed01g2650 Cmo01g01912 Cmo09g00209 . . . Car09g00184 . . Bhi09g03341 Tan01g4811 Cmetu07g1348 . Hepe01g1746 . . Cla05g02027 Cam05g2177 Cec05g2193 Cco05g2240 Clacu05g2170 Cmu05g2037 Cre05g2165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009167 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 0 2 1 1 34