Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2171 ATGTCCACGAGGAGCGAACATCATACAGTCCCGCTCTCTGTGCTCCTAAGGCGTGAATTGGCGATTGAGAAGATTGAGAGACCAGAAATCTTACATGGTCAGGCGAGTCAGAGTAAGAAAGGGGAGGATTTTACATTGCTAAAGACGGAATGCGAGAGAGTGGTAGGAGATGGAGTCTCAACGTATTCGGTTTTTGGGCTTTTTGATGGACATAATGGATCTGCTGCTGCTATTTATGCTAAGGAGAATTTATTGAACAATGTTTTAGCTGCTATTCCATCAGATCTCAACAGAGACGAATGGATTGCAGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACGGACAAAGATTTTCAAGAGAAAGCACAAACATCAGGAACCACTGTTACTTTCATGATTATTGAGGGATGGGTTCTCACTGTTGCTTCTGTTGGTGATTCCCGTTGCACTTTGGAATCAGCTGAAGGTGACATCTACTACTTATCAGCAGATCATAGACTAGAATGCAACGAAGAAGAGAGAGAACGTATAATTGCTAGTGGTGGTGAGGTGGGTCGGCTGAATACTGGTGGTGGTGCAGAGATTGGTCCATTGAGATGCTGGCCTGGTGGCTTATGTCTATCACGATCAATTGGTGATATGGATGTTGGCGAGTTTATAGTGCCTGTTCCCTACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTATTTCAAGTGATGGTGTTTGGGATGCTTTATCAGCTGAAACTGCCTTTGATTGTTGTCGGGGGATGCCAGTAGAAACTGCTGCCGCACAGATTGTGAAAGAAGCAGTACAGTCAAAGGGACTTCGAGATGATACTACATGTATTGTGATTGACATATTACCAAGGGAGAAACCATCTACTGCTTTGCCGCCACCGAAGAAGCAGGTAAAAGGAATGTTTAAATCAATGTTCCGCAAAAAGTCTTCTGAATCATCTTCTCATTTTGAGAAAGAATATAATGAGCCAGATGTTGTCGAGGAATTATTTGAGGAAGGATCGGCTATGCTGTCAGAAAGGTTAGATGCCAAGTATCCTATCTGCAACATGTTTAAGCTATTTGTATGTGCAGTATGCCAAATTGAGATCCAACCTCGGGAGGGTATCTCCATATATGCCGGCTCATCTAACAGAGGAAAATTGCGCGCTTGGGATGGACCTTTTCTATGCTTAAGTTGCACAGAGAAGAAAGAAGCTATGGAAGGGAAAAGACCATCTGGAGATAGACACAGCAGTGGAAGTGACTAG 1287 43.75 MSTRSEHHTVPLSVLLRRELAIEKIERPEILHGQASQSKKGEDFTLLKTECERVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLAAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIIEGWVLTVASVGDSRCTLESAEGDIYYLSADHRLECNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSTGGRVIISSDGVWDALSAETAFDCCRGMPVETAAAQIVKEAVQSKGLRDDTTCIVIDILPREKPSTALPPPKKQVKGMFKSMFRKKSSESSSHFEKEYNEPDVVEELFEEGSAMLSERLDAKYPICNMFKLFVCAVCQIEIQPREGISIYAGSSNRGKLRAWDGPFLCLSCTEKKEAMEGKRPSGDRHSSGSD 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30362543 30365942 + ClG42_05g0217100.10 Clacu05g2171 249918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2171 428 Gene3D - 32 301 IPR036457 -
Clacu05g2171 428 Pfam Protein phosphatase 2C 54 278 IPR001932 -
Clacu05g2171 428 PANTHER PROTEIN PHOSPHATASE 32 292 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu05g2171 428 SMART PP2C_4 26 291 IPR001932 -
Clacu05g2171 428 SUPERFAMILY PP2C-like 38 293 IPR036457 -
Clacu05g2171 428 FunFam probable protein phosphatase 2C 12 32 299 - -
Clacu05g2171 428 SMART PP2C_SIG_2 46 293 IPR001932 -
Clacu05g2171 428 CDD PP2Cc 39 293 IPR001932 -
Clacu05g2171 428 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2171 Clacu-Chr5:30362543 Clacu05g2449 Clacu-Chr5:32651776 6.10E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2171 - - - 0.0