Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2193 ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGATTCTTCCTCATCGCCTCCCTTATGCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTAGGCATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA 675 46.52 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPPLCINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30540350 30541024 - ClG42_05g0219300.10 Clacu05g2193 249940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2193 224 FunFam BHLH transcription factor 134 197 - -
Clacu05g2193 224 MobiDBLite consensus disorder prediction 32 49 - -
Clacu05g2193 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
Clacu05g2193 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 190 IPR036638 GO:0046983(InterPro)
Clacu05g2193 224 CDD bHLH_AtIND_like 132 188 - -
Clacu05g2193 224 MobiDBLite consensus disorder prediction 28 49 - -
Clacu05g2193 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 201 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2193 224 SMART finulus 137 186 IPR011598 GO:0046983(InterPro)
Clacu05g2193 224 Gene3D - 134 196 IPR036638 GO:0046983(InterPro)
Clacu05g2193 224 Pfam Helix-loop-helix DNA-binding domain 140 181 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2193 Clacu-Chr5:30540350 Clacu09g0042 Clacu-Chr9:482942 1.80E-30 dispersed
Clacu01g1616 Clacu-Chr1:28189043 Clacu05g2193 Clacu-Chr5:30540350 2.40E-33 transposed
Clacu02g1306 Clacu-Chr2:26035364 Clacu05g2193 Clacu-Chr5:30540350 1.00E-40 transposed
Clacu04g0742 Clacu-Chr4:21659075 Clacu05g2193 Clacu-Chr5:30540350 2.20E-21 transposed
Clacu01g1763 Clacu-Chr1:29780281 Clacu05g2193 Clacu-Chr5:30540350 3.40E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47743 PF00010 HLH 1.40E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2193 - - - 0.0