Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2207 ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGGGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGCTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTATGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA 456 52.85 MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSATQISDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30641871 30642326 - ClG42_05g0220700.10 Clacu05g2207 249954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2207 151 Pfam AP2 domain 29 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2207 151 CDD AP2 29 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2207 151 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2207 151 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2207 151 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2207 151 MobiDBLite consensus disorder prediction 118 138 - -
Clacu05g2207 151 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Clacu05g2207 151 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2207 151 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2207 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 150 - -
Clacu05g2207 151 MobiDBLite consensus disorder prediction 118 151 - -
Clacu05g2207 151 MobiDBLite consensus disorder prediction 1 28 - -
Clacu05g2207 151 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1260 Clacu-Chr2:25200484 Clacu05g2207 Clacu-Chr5:30641871 3.80E-40 dispersed
Clacu05g2207 Clacu-Chr5:30641871 Clacu08g0111 Clacu-Chr8:2251829 1.10E-20 dispersed
Clacu01g1766 Clacu-Chr1:29837749 Clacu05g2207 Clacu-Chr5:30641871 1.60E-39 wgd
Clacu05g2207 Clacu-Chr5:30641871 Clacu08g1771 Clacu-Chr8:27138147 3.90E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47746 PF00847 AP2 2.20E-11 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2207 K09286 - csv:101219005 268.855