Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2214 ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCACTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAGTAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAGCAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTACACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAGATTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTTTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGTCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGTCATCCGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGGCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1164 48.88 MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASTTPNAIAGYEAVADSVVSKFKKVISLLDRSRTGHARFRRAPVLTTTPPPPPPPKVKPQHQDPSSSSPISVPQIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30691928 30693532 - ClG42_05g0221400.10 Clacu05g2214 249961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2214 387 ProSiteProfiles WRKY domain profile. 309 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2214 387 Pfam Plant zinc cluster domain 267 312 IPR018872 -
Clacu05g2214 387 MobiDBLite consensus disorder prediction 107 146 - -
Clacu05g2214 387 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 376 IPR044810 GO:0003700(InterPro)
Clacu05g2214 387 SUPERFAMILY WRKY DNA-binding domain 312 373 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2214 387 FunFam WRKY transcription factor 65 298 375 - -
Clacu05g2214 387 Gene3D WRKY domain 299 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2214 387 SMART WRKY_cls 314 374 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2214 387 Pfam WRKY DNA -binding domain 316 372 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2214 387 MobiDBLite consensus disorder prediction 115 130 - -
Clacu05g2214 387 MobiDBLite consensus disorder prediction 131 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0823 Clacu-Chr2:9513234 Clacu05g2214 Clacu-Chr5:30691928 1.30E-68 dispersed
Clacu05g2214 Clacu-Chr5:30691928 Clacu09g0752 Clacu-Chr9:6696295 8.70E-49 dispersed
Clacu05g2853 Clacu-Chr5:35743055 Clacu05g2214 Clacu-Chr5:30691928 2.40E-58 transposed
Clacu06g1480 Clacu-Chr6:25749442 Clacu05g2214 Clacu-Chr5:30691928 4.50E-55 transposed
Clacu01g1770 Clacu-Chr1:29884634 Clacu05g2214 Clacu-Chr5:30691928 1.60E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47748 PF03106 WRKY 4.00E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2214 - - - 0.0