Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g2214 | ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCACTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAGTAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAGCAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTACACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAGATTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTTTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGTCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGTCATCCGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGGCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA | 1164 | 48.88 | MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASTTPNAIAGYEAVADSVVSKFKKVISLLDRSRTGHARFRRAPVLTTTPPPPPPPKVKPQHQDPSSSSPISVPQIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30691928 | 30693532 | - | ClG42_05g0221400.10 | Clacu05g2214 | 249961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g2214 | 387 | ProSiteProfiles | WRKY domain profile. | 309 | 375 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g2214 | 387 | Pfam | Plant zinc cluster domain | 267 | 312 | IPR018872 | - | |
Clacu05g2214 | 387 | MobiDBLite | consensus disorder prediction | 107 | 146 | - | - | |
Clacu05g2214 | 387 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 35 | 376 | IPR044810 | GO:0003700(InterPro) | |
Clacu05g2214 | 387 | SUPERFAMILY | WRKY DNA-binding domain | 312 | 373 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g2214 | 387 | FunFam | WRKY transcription factor 65 | 298 | 375 | - | - | |
Clacu05g2214 | 387 | Gene3D | WRKY domain | 299 | 375 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g2214 | 387 | SMART | WRKY_cls | 314 | 374 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g2214 | 387 | Pfam | WRKY DNA -binding domain | 316 | 372 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g2214 | 387 | MobiDBLite | consensus disorder prediction | 115 | 130 | - | - | |
Clacu05g2214 | 387 | MobiDBLite | consensus disorder prediction | 131 | 146 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0823 | Clacu-Chr2:9513234 | Clacu05g2214 | Clacu-Chr5:30691928 | 1.30E-68 | dispersed | |
Clacu05g2214 | Clacu-Chr5:30691928 | Clacu09g0752 | Clacu-Chr9:6696295 | 8.70E-49 | dispersed | |
Clacu05g2853 | Clacu-Chr5:35743055 | Clacu05g2214 | Clacu-Chr5:30691928 | 2.40E-58 | transposed | |
Clacu06g1480 | Clacu-Chr6:25749442 | Clacu05g2214 | Clacu-Chr5:30691928 | 4.50E-55 | transposed | |
Clacu01g1770 | Clacu-Chr1:29884634 | Clacu05g2214 | Clacu-Chr5:30691928 | 1.60E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47748 | PF03106 | WRKY | 4.00E-25 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g2214 | - | - | - | 0.0 |